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7WL0

Crystal structure of human alkbh5 in complex with n-oxalylglycine (nog) and m6a-containing ssrna

PDB DOI: 10.2210/pdb7wl0/pdb

Classification: OXIDOREDUCTASE/RNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-01-12
Deposition Author(s): Aik, W.S. , Kaur, S. , Mcdonough, M.A. , Schofield, C.J.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

7wl0
Literature

Crystal structure of human alkbh5 in complex with n-oxalylglycine (nog) and m6a-containing ssrna

Aik, W.S. , Kaur, S. , Mcdonough, M.A. , Schofield, C.J.

Primary Citation of Related Structures: 7WL0


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA demethylase ALKBH5 A 220 Homo Sapiens , Synthetic Construct SQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL
RNA demethylase ALKBH5 C 220 Homo Sapiens , Synthetic Construct SQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL
RNA demethylase ALKBH5 E 220 Homo Sapiens , Synthetic Construct SQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL
RNA demethylase ALKBH5 G 220 Homo Sapiens , Synthetic Construct SQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL
RNA demethylase ALKBH5 I 220 Homo Sapiens , Synthetic Construct SQQLQKEEEARKVKSGIRQMRLFSQDECAKIEARIDEVVSRAEKGLYNEHTVDRAPLRNKYFFGEGYTYGAQLQKRGPGQERLYPPGDVDEIPEWVHQLVIQKLVEHRVIPEGFVNSAVINDYQPGGCIVSHVDPIHIFERPIVSVSFFSDSALCFGCKFQFKPIRVSEPVLSLPVRRGSVTVLSGYAADEITHCIRPQDIKERRAVIILRKTRLDAPRL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(*UP*GP*GP*(6MZ)P*CP*UP*GP*C)-3') b 8 NA UGGACUGC
RNA (5'-R(*UP*GP*GP*(6MZ)P*CP*UP*GP*C)-3') d 8 NA UGGACUGC
RNA (5'-R(*UP*GP*GP*(6MZ)P*CP*UP*GP*C)-3') f 8 NA UGGACUGC
RNA (5'-R(*UP*GP*GP*(6MZ)P*CP*UP*GP*C)-3') h 8 NA UGGACUGC
RNA (5'-R(*UP*GP*GP*(6MZ)P*CP*UP*GP*C)-3') j 8 NA UGGACUGC
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-01-12
Deposition Author(s): Aik, W.S. , Kaur, S. , Mcdonough, M.A. , Schofield, C.J.