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FASTA Sequence PDB Format mmCIF Format
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7VD5

Structure of c2s2m2-type psii-fcpii supercomplex from diatom

PDB DOI: 10.2210/pdb7vd5/pdb

Classification: ELECTRON TRANSPORT
Organism(s): Chaetoceros Gracilis

Deposited: 2021-09-06
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.5 Å

7vd5
Literature

Structure of c2s2m2-type psii-fcpii supercomplex from diatom

Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.

Primary Citation of Related Structures: 7VD5


Proteins
Molecule Chains Sequence Length Organism Sequence
Photosystem II protein D1 A 334 Chaetoceros Gracilis VSLWERFCAWITSTENRLYIGWFGCLMFPTLLTATSCFIIAFIAAPPVDIDGIREPVAGSLLYGNNIISGAVVPSSNAIGMHFYPIWEAASIDEWLYNGGPYQLIVLHFLLGVSAYMGREWELSYRLGMRPWIFVAFSAPVAAASAVFLVYPIGQGSFSDGMPLGISGTFNFMLVFQAEHNILMHPFHMAGVAGVFGGSLFSAMHGSLVTSSLIRETTENESTNYGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRALHFFLALWPVVGIWITSMGISTMAFNLNGFNFNQSVVDSQGRVINTWADILNRANLGIEVMHERNAHNFPLDLA
Photosystem II reaction center protein K K 37 Chaetoceros Gracilis RLPEAYVVFSPIVDVLPIIPVFFLLLAFVWQAAIGFR
Photosystem II reaction center protein L L 38 Chaetoceros Gracilis MTGPNPNKQAVELNRTSLYWGLLLIFVLAVLFSSYFFN
Photosystem II subunit M 42 Chaetoceros Gracilis EVQFGAYLAVLLGTFLPALFLVNLFIQTEARKAGKAGGQDSD
Extrinsic protein in photosystem II O 245 Chaetoceros Gracilis KSQINELSYLQVKGTGLANRCAEVVGEDSIKPKPGAKLVDMCIEPKAWAVEEEVGKAGKTEKKFVNSKVMTRQTYTLDAIEGPITVDGGKITFNEKEGIDYAATTVQLPGGERVPFLFTVKDLVAKGNGDTFKPGFQMGGDFNTPSYRTGLFLDPKGRGGTTGYDMAVALPALQLGEEGDAELFGENNKVFDITQGRIEMEVNKVNAEDSEIGGVFVATQLSDTDMGSKTPKKVLTKGIFYAKVD
Photosystem II reaction center protein T T 30 Chaetoceros Gracilis MEALVYTFLLIGTLMVIFFAVFFRETPRIL
Extrinsic protein in photosystem II U 93 Chaetoceros Gracilis VIDYENIGYLGGSSIVDINNANVRAYLKMPGMYPTVAGKIVSHGPYSGVADLYKIPGLSSAEADVIKKYESRLTAKTPSPDYVIDRINNGLYR
Cytochrome c-550 V 136 Chaetoceros Gracilis DLDEATRTVVVDNAGNTTVLTPEQVKRGKRLFNATCGACHVGGITKTNPNVGLDPEALSLATPRRDNISALVDYIKNPTTYDGLESIAEVHPSIKSADIYPRMRSLTDEDLYSIAGHIMLSPKIASEKWGGGKIYY
Photosystem II reaction center protein Ycf12 Y 34 Chaetoceros Gracilis MINWQVIGQLMSTAVIMLAGPAVIVLLALKKGNL
Photosystem II reaction center X protein X 37 Chaetoceros Gracilis MTASLSNFIASLIAGGVVVGVIAIALIVISKSDRILR
Photosystem II reaction center protein Z Z 59 Chaetoceros Gracilis MITLLVALLVLISLGLVVTVPVALATPGEWEIAKGKFNRFFQIWVFLVIVIAAADGISS
Photosystem II CP47 reaction center protein B 484 Chaetoceros Gracilis ALPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPVLNPMWRQGMFVMPFMTRLGITDSWGGWSITGESVSNPGIWSFEGVALSHIILSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFRDKEGRELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVDFYGGKLNGQTFKDAPTVKKFARKAQLGEVFEFDRTSLESDGVFRSSPRGWYTYGHANFALLFFFGHLWHGGRTIFRDVFTGIGAE
Extrinsic protein in photosystem II Q 151 Chaetoceros Gracilis SPRFSVFGLVGDGTSYSEGAAYGTDQADKLYSPYSVYSPEGEKSLYKPDNAEYLARKKAVLAETKNRLQKIPAYVDKKEWFNVKDELTRYMYETRGAVRSLSSSVTQKEKAEVFFRALEDTYGAATLKKGDAVKASNDKAIAALDAFTATL
Photosystem II reaction center protein W W 52 Chaetoceros Gracilis TEGTNEWFGVDDLRLLAVLFLGHWAILSLWLGSYGDSNEDEDFFGEIDYSAR
Unknown protein 0 0 31 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 0 5 31 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 1 1 30 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Unknown protein 1 6 30 Chaetoceros Gracilis XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Chlorophyll a/b-binding protein 11 176 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGV
Chlorophyll a/b-binding protein 31 176 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGDGQGV
Fcpb2, Fucoxanthin chlorophyll a/c-binding protein 12 169 Chaetoceros Gracilis NELEIGATAPLGVYDPLGWLDGEPENFERRRAVERKHGRVAMAAVVGTIVHNNHITFDGYLSPSANLKFSDIPTGVDGIRAIPTAGLLQILFFFALVELAWMPASKYDGDYGVGWFGSNIEDPEEKARKLNVELNNGRAAMMGIMGNMVTECITGQTMYEQYAAGHFSP
Fcpb2, Fucoxanthin chlorophyll a/c-binding protein 32 169 Chaetoceros Gracilis NELEIGATAPLGVYDPLGWLDGEPENFERRRAVERKHGRVAMAAVVGTIVHNNHITFDGYLSPSANLKFSDIPTGVDGIRAIPTAGLLQILFFFALVELAWMPASKYDGDYGVGWFGSNIEDPEEKARKLNVELNNGRAAMMGIMGNMVTECITGQTMYEQYAAGHFSP
Chlorophyll a/b-binding protein 13 169 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISP
Chlorophyll a/b-binding protein 33 169 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISP
Chlorophyll a/b-binding protein 14 172 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGD
Chlorophyll a/b-binding protein 34 172 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPFGD
Chlorophyll a/b-binding protein 15 170 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPF
Chlorophyll a/b-binding protein 35 170 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHISPF
Fcpb3, Fucoxanthin chlorophyll a/c-binding protein 16 179 Chaetoceros Gracilis ELEDGIGAVAPLGYFDPLGYIKDEETFIRYRAVERKHGRVAMMAMLGTFVHNNGWTFDGYLSPSQGLKFSDIDSGIGGLFQVPPAGLAQIILLCGFVELAWWPASNLSGDYGVRLGTLNDWEEQPAKYYRQKNAELNNGRAAMMGILGTFTHEVITGQNFAEQAAAGHFSPFGDGQGFF
Fcpb3, Fucoxanthin chlorophyll a/c-binding protein 36 179 Chaetoceros Gracilis ELEDGIGAVAPLGYFDPLGYIKDEETFIRYRAVERKHGRVAMMAMLGTFVHNNGWTFDGYLSPSQGLKFSDIDSGIGGLFQVPPAGLAQIILLCGFVELAWWPASNLSGDYGVRLGTLNDWEEQPAKYYRQKNAELNNGRAAMMGILGTFTHEVITGQNFAEQAAAGHFSPFGDGQGFF
Photosystem II CP43 reaction center protein C 451 Chaetoceros Gracilis IAGRDIESTGFAWWSGNARLINVSGKLLGAHVAHAGLMVFWAGAMVLFEVSHFVPEKPTYEQGFILIQHLATLGYGIGPGGEITSTVPYFAVGVIHLISSAILGFGGIYHSLLGPDTLEESFPFFGYDWRDKNKMTTILGIHLCLLGLGSFLLVIKAMYLGGVYDTWAPGGGDVRYITTPTLNPIVIFGYVFRSPFGGDGWVVSVNNMEDVIGGHIWVGILCITGGIWHIFTKPFAWARRAFVWSGEAYLSYSLAAISLMGFTAALYSWYNNTAYPSELYGPTGPEASQAQAFTFLVRDQRLGANVSSAQGPTGLGKYLMRSPSGEIIFGGETMRFWDLRAPWVEPLRGPNGLDINKIKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINSVNYVSPRSWLCCSHFFLAFFFLVGHWWHSGRARAAAAGFEKGINRANEPVLSMRPID
Fcpb4, Fucoxanthin chlorophyll a/c-binding protein 17 176 Chaetoceros Gracilis SEIELGATEPLGVFDPLGWLETEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYISPSNNLKFSDIPTGIDGIFSVPTAGLAQIIAFLGFVELAWLPASQYDGDYGVGYFGNDILDPEEKARKLNAELNNGRAAMMGIMGNMVAEKITGQTMYEQYAAGHFNPFNDGEGF
Fcpb4, Fucoxanthin chlorophyll a/c-binding protein 37 176 Chaetoceros Gracilis SEIELGATEPLGVFDPLGWLETEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYISPSNNLKFSDIPTGIDGIFSVPTAGLAQIIAFLGFVELAWLPASQYDGDYGVGYFGNDILDPEEKARKLNAELNNGRAAMMGIMGNMVAEKITGQTMYEQYAAGHFNPFNDGEGF
Chlorophyll a/b-binding protein 18 168 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHIS
Chlorophyll a/b-binding protein 38 168 Chaetoceros Gracilis SEIELGVTEPLGVYDPLGWLESEPEAFERRRAVERKHGRVAMAAVVGTIVHNNHIVFDGYLSPSNNLKFSDIPTGVDGIRAIPTAGLAQILAFFALVELAWMPASKYDGDYGVGYFGTDIKDPEEKARKLNVELNNGRAAMMGIMGNMVAEVLTGQTMYEQYASGHIS
Fcpb5, Fucoxanthin chlorophyll a/c-binding protein 19 227 Chaetoceros Gracilis GASPSADAWANSIESKALPFARAPATLDGTMLGDFGFDPLGFSTVPVGPWFTGIEGRNGQIGNLNWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEWTGVDAYSNLNPLEAFSQVPGLAILQIFLFMSYLEVRRINIIKEEGENYMPGDLRIGQGEGRWNPFGLDYSPEAYEEKRLQELKHCRLAMIGVFGLWAQAQASGVGVTEQIGAALTTPDYYAKAGYFLP
Fcpb5, Fucoxanthin chlorophyll a/c-binding protein 39 227 Chaetoceros Gracilis GASPSADAWANSIESKALPFARAPATLDGTMLGDFGFDPLGFSTVPVGPWFTGIEGRNGQIGNLNWYREAELIHGRIAQVAVVGFIAPGLFGTLPGNEWTGVDAYSNLNPLEAFSQVPGLAILQIFLFMSYLEVRRINIIKEEGENYMPGDLRIGQGEGRWNPFGLDYSPEAYEEKRLQELKHCRLAMIGVFGLWAQAQASGVGVTEQIGAALTTPDYYAKAGYFLP
Fcpb6, Fucoxanthin chlorophyll a/c-binding protein 20 155 Chaetoceros Gracilis EPLGLYDPLGWLDPEKDPASKFATFHANFERRRAVERKHGRIAMVAVVGMLFHNADIEFPGYLSGELGIRFSDVPNGMNGLFSIPLAGLTQIVFAIGVMELAIWPASNYSGDYGTGYGRPFVPNVLEGDELKYKLDMEINQGRAAMMGIMGALVG
Fcpb6, Fucoxanthin chlorophyll a/c-binding protein 40 155 Chaetoceros Gracilis EPLGLYDPLGWLDPEKDPASKFATFHANFERRRAVERKHGRIAMVAVVGMLFHNADIEFPGYLSGELGIRFSDVPNGMNGLFSIPLAGLTQIVFAIGVMELAIWPASNYSGDYGTGYGRPFVPNVLEGDELKYKLDMEINQGRAAMMGIMGALVG
Fcpb7, Fucoxanthin chlorophyll a/c-binding protein 21 162 Chaetoceros Gracilis FENELGAQPPLGFFDPLGLVEDGNQAKFDRLRYVELKHGRISMLAVVGYLIEKAGIRLPGNISYDGTSFADIPDGFAALSKIPDAGLFQLFAFIGFLEVFVMKDITGGEFVGDFRNGFIDFGWDSFDEETKLKKRAIELNQGRAAMMGILALMVHEKLGVSL
Fcpb7, Fucoxanthin chlorophyll a/c-binding protein 41 162 Chaetoceros Gracilis FENELGAQPPLGFFDPLGLVEDGNQAKFDRLRYVELKHGRISMLAVVGYLIEKAGIRLPGNISYDGTSFADIPDGFAALSKIPDAGLFQLFAFIGFLEVFVMKDITGGEFVGDFRNGFIDFGWDSFDEETKLKKRAIELNQGRAAMMGILALMVHEKLGVSL
Photosystem II D2 protein D 341 Chaetoceros Gracilis RGLFDLVDDWLKKDRFVFVGWSGLLLFPTAYLAAGGWMTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSVGHSLLLLWGPEAQGDFTRWCQIGGLWTFVALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNHLLDEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Cytochrome b559 subunit alpha E 75 Chaetoceros Gracilis RPFSDIITSVRYWIIHSITIPSLFVSGWLFISTGLAYDVFGTPRPNEYFTQDRQQVPLVNDRFSAKQELEDLTKG
Cytochrome b559 subunit beta F 28 Chaetoceros Gracilis FRWLAIHGLAIPTVFFLGGITAMQFIQR
Photosystem II reaction center protein H H 66 Chaetoceros Gracilis ALRTRLGEILRPLNAEYGKVAPGWGTTPIMGIVMLAFLIFLVIILQIYNSSLIIENVDVDWANGIV
Photosystem II reaction center protein I I 35 Chaetoceros Gracilis MLTLKILVYTTVIFFVSLFIFGFLSSDPSRNPNRK
Photosystem II reaction center protein J J 34 Chaetoceros Gracilis RIPLWLVGLVGGLAVITMLSLFFYGSYSGLGSSL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-09-06
Deposition Author(s): Akita, F. , Kato, K. , Miyazaki, N. , Nagao, R. , Shen, J.R.