7V9U
Cryo-em structure of e.coli retron-ec86 (rt-msdna-rna) at 3.2 angstrom
PDB DOI: 10.2210/pdb7v9u/pdb
Classification: TRANSFERASE/DNA/RNA Organism(s): Adineta Vaga
Deposited: 2021-08-26 Deposition Author(s): Guan, Z.Y. , Wang, Y.J. , Zou, T.T.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.12 Å
Cryo-em structure of e.coli retron-ec86 (rt-msdna-rna) at 3.2 angstrom
Guan, Z.Y. , Wang, Y.J. , Zou, T.T.
Primary Citation of Related Structures: 7V9U
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA-directed DNA polymerase from retron EC86 | A | 320 | Adineta Vaga | MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTADFRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILNNATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGAPSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPSEGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHVRGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKT |
| RNA-directed DNA polymerase from retron EC86 | B | 320 | Adineta Vaga | MKSAEYLNTFRLRNLGLPVMNNLHDMSKATRISVETLRLLIYTADFRYRIYTVEKKGPEKRMRTIYQPSRELKALQGWVLRNILDKLSSSPFSIGFEKHQSILNNATPHIGANFILNIDLEDFFPSLTANKVFGVFHSLGYNRLISSVLTKICCYKNLLPQGAPSSPKLANLICSKLDYRIQGYAGSRGLIYTRYADDLTLSAQSMKKVVKARDFLFSIIPSEGLVINSKKTCISGPRSQRKVTGLVISQEKVGIGREKYKEIRAKIHHIFCGKSSEIEHVRGWLSFILSVDSKSHRRLITYISKLEKKYGKNPLNKAKT |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (105-MER) | d | 105 | NA | GAAAGTTGCGCACCCTTACGTCAGAAAAAACGGGTTTCCTGGTTGGCTCGGAGAGCATCAGGCGATGCTCTCCGTTCCAACAAGGAAAACAGACAGTAACTCAGA |
| DNA (105-MER) | c | 105 | NA | GAAAGTTGCGCACCCTTACGTCAGAAAAAACGGGTTTCCTGGTTGGCTCGGAGAGCATCAGGCGATGCTCTCCGTTCCAACAAGGAAAACAGACAGTAACTCAGA |
| RNA (81-MER) | e | 81 | NA | UGCGCACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUUACU |
| RNA (81-MER) | g | 81 | NA | UGCGCACCCUUAGCGAGAGGUUUAUCAUUAAGGUCAACCUCUGGAUGUUGUUUCGGCAUCCUGCAUUGAAUCUGAGUUACU |
| RNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3') | f | 14 | NA | CGUAAGGGUGCGCA |
| RNA (5'-R(P*CP*GP*UP*AP*AP*GP*GP*G)-3') | h | 14 | NA | CGUAAGGGUGCGCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-08-26 Deposition Author(s): Guan, Z.Y. , Wang, Y.J. , Zou, T.T.