PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7V9G

Native ben4 domain of protein bend3 with dna

PDB DOI: 10.2210/pdb7v9g/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Mus Musculus , Synthetic Construct

Deposited: 2021-08-25
Deposition Author(s): Huang, C. , Li, Y. , Liu, C.P. , Wang, M. , Xiong, J. , Xu, R.M. , Yang, X. , You, Q. , Zhang, J. , Zhang, T. , Zhang, T. , Zhang, Y. , Zhang, Z. , Zhu, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.5 Å

7v9g
Literature

Native ben4 domain of protein bend3 with dna

Huang, C. , Li, Y. , Liu, C.P. , Wang, M. , Xiong, J. , Xu, R.M. , Yang, X. , You, Q. , Zhang, J. , Zhang, T. , Zhang, T. , Zhang, Y. , Zhang, Z. , Zhu, B.

Primary Citation of Related Structures: 7V9G


Proteins
Molecule Chains Sequence Length Organism Sequence
BEN domain-containing protein 3 A 114 Mus Musculus , Synthetic Construct VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK
BEN domain-containing protein 3 D 114 Mus Musculus , Synthetic Construct VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK
BEN domain-containing protein 3 G 114 Mus Musculus , Synthetic Construct VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK
BEN domain-containing protein 3 J 114 Mus Musculus , Synthetic Construct VPSPYLLSDKEVREIVQQSLSVGNFAARLLVRLFPELFTTENLRLQYNHSGACNKKQLDPTRLRLIRHYVEAVYPVEKMEEVWHYECIPSIDERCRRPNRKKCDILKKAKKVEK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3') b 16 NA TGGCCCCACGCGGTGC
DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3') e 16 NA TGGCCCCACGCGGTGC
DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3') h 16 NA TGGCCCCACGCGGTGC
DNA (5'-D(*TP*GP*GP*CP*CP*CP*CP*AP*CP*GP*CP*GP*GP*TP*GP*C)-3') k 16 NA TGGCCCCACGCGGTGC
DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3') c 16 NA GCACCGCGTGGGGCCA
DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3') f 16 NA GCACCGCGTGGGGCCA
DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3') i 16 NA GCACCGCGTGGGGCCA
DNA (5'-D(*GP*CP*AP*CP*CP*GP*CP*GP*TP*GP*GP*GP*GP*CP*CP*A)-3') l 16 NA GCACCGCGTGGGGCCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-08-25
Deposition Author(s): Huang, C. , Li, Y. , Liu, C.P. , Wang, M. , Xiong, J. , Xu, R.M. , Yang, X. , You, Q. , Zhang, J. , Zhang, T. , Zhang, T. , Zhang, Y. , Zhang, Z. , Zhu, B.