7V01
Staphylococcus epidermidis rp62a crispr short effector complex with self rna target and atp
PDB DOI: 10.2210/pdb7v01/pdb
Classification: HYDROLASE/RNA Organism(s): Staphylococcus Epidermidis Rp62A , Synthetic Construct
Deposited: 2022-05-09 Deposition Author(s): Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.67 Å
Staphylococcus epidermidis rp62a crispr short effector complex with self rna target and atp
Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.
Primary Citation of Related Structures: 7V01
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CRISPR system Cms endoribonuclease Csm3 | A | 214 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK |
| CRISPR system Cms endoribonuclease Csm3 | B | 214 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK |
| CRISPR system Cms endoribonuclease Csm3 | C | 214 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK |
| CRISPR system Cms protein Csm5 | E | 340 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MTIKNYEVVIKTLGPIHIGSGQVMKKQDYIYDFYNSKVYMINGNKLVKFLKRKNLLYTYQNFLRYPPKNPRENGLKDYLDAQNVKQSEWEAFVSYSEKVNQGKKYGNTRPKPLNDLHLMVRDGQNKVYLPGSSIKGAIKTTLVSKYNNEKNKDIYSKIKVSDSKPIDESNLAIYQKIDINKSEKSMPLYRECIDVNTEIKFKLTIEDEIYSINEIEQSIQDFYKNYYDKWLVGFKETKGGRRFALEGGIPDVLNQNILFLGAGTGFVSKTTHYQLKNRKQAKQDSFEILTKKFRGTYGKMKEIPSNVPVALKGTTNQSRHTSYQQGMCKVSFQELNNEVL |
| CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) | F | 757 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MNKKNILMYGSLLHDIGKIIYRSGDHTFSRGTHSKLGHQFLSQFSEFKDNEVLDNVAYHHYKELAKANLDNDNTAYITYIADNIASGIDRRDIIEEGDEEYEKQLFNFDKYTPLYSVFNIVNSEKLKQTNGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSHDLEHKLSIKEGTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFSKYENTKSFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLELMLEVIVDQLLERLELARANLLYTGGGHAYLLVSNTDKVKKKITQFNNELKKWFMSEFTTDLSLSMAFEKCSGDDLMNTSGNYRTIWRNVSSKLSDIKAHKYSAEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFNKFISVIDYEEAEMLVQNNNQVRIYSKNKPYIGIGISTNLWMCDYDYASQNQDMREKGIGSYVDREEGVKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEASIYINDKFKEFTLDKLTLSAGVGMFSGKYPVSKMAFETGRLEEAAKTGEKNQISLWLQEKVYNWDEFKKNILEEKLLVLQQGFSQTDEHGKAFIYKMLALLRNNEAINIARLAYLLARSKMNEDFTSKIFNWAQNDKDKNQLITALEYYIYQIREAD |
| CRISPR system Cms protein Csm4 | H | 304 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MTLATKVFKLSFKTPVHFGKKRLSDGEMTITADTLFSALFIETLQLGKDTDWLLNDLIISDTFPYENELYYLPKPLIKIDSKEEDNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFNIGYFSLQTKVSLIAQETDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDHLNNIMTALQYSGLGGKRNAGYGQFEYEIINNQQLSKLLNQNGKHSILLSTAMAKKEEIESALKEARYILTKRSGFVQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDIFNVGHNGKHPVYRYAKPLWLEV |
| CRISPR system Cms protein Csm2 | I | 128 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MTFAHEVVKSNVKNVKDRKGKEKQVLFNGLTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED |
| CRISPR system Cms protein Csm2 | K | 128 | Staphylococcus Epidermidis Rp62A , Synthetic Construct | MTFAHEVVKSNVKNVKDRKGKEKQVLFNGLTTSKLRNLMEQVNRLYTIAFNSNEDQLNEEFIDELEYLKIKFYYEAGREKSVDEFLKKTLMFPIIDRVIKKESKKFFLDYCKYFEALVAYAKYYQKED |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-05-09 Deposition Author(s): Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.