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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7UZX

Staphylococcus epidermidis rp62a crispr effector subcomplex with non-self target rna bound

PDB DOI: 10.2210/pdb7uzx/pdb

Classification: HYDROLASE/RNA
Organism(s): Staphylococcus Epidermidis Rp62A , Synthetic Construct

Deposited: 2022-05-09
Deposition Author(s): Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.49 Å

7uzx
Literature

Staphylococcus epidermidis rp62a crispr effector subcomplex with non-self target rna bound

Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.

Primary Citation of Related Structures: 7UZX


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR system Cms endoribonuclease Csm3 A 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 B 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 C 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 D 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms endoribonuclease Csm3 E 214 Staphylococcus Epidermidis Rp62A , Synthetic Construct MYSKIKISGTIEVVTGLHIGGGGESSMIGAIDSPVVRDLQTKLPIIPGSSIKGKMRNLLAKHFGLKMKQESHNQDDERVLRLFGSSEKGNIQRARLQISDAFFSEKTKEHFAQNDIAYTETKFENTINRLTAVANPRQIERVTRGSEFDFVFIYNVDEESQVEDDFENIEKAIHLLENDYLGGGGTRGNGRIQFKDTNIETVVGEYDSTNLKIK
CRISPR system Cms protein Csm4 H 304 Staphylococcus Epidermidis Rp62A , Synthetic Construct MTLATKVFKLSFKTPVHFGKKRLSDGEMTITADTLFSALFIETLQLGKDTDWLLNDLIISDTFPYENELYYLPKPLIKIDSKEEDNHKAFKKLKYVPVHHYNQYLNGELSAEDATDLNDIFNIGYFSLQTKVSLIAQETDSSADSEPYSVGTFTFEPEAGLYFIAKGSEETLDHLNNIMTALQYSGLGGKRNAGYGQFEYEIINNQQLSKLLNQNGKHSILLSTAMAKKEEIESALKEARYILTKRSGFVQSTNYSEMLVKKSDFYSFSSGSVFKNIFNGDIFNVGHNGKHPVYRYAKPLWLEV
CRISPR system single-strand-specific deoxyribonuclease Cas10/Csm1 (subtype III-A) F 757 Staphylococcus Epidermidis Rp62A , Synthetic Construct MNKKNILMYGSLLHDIGKIIYRSGDHTFSRGTHSKLGHQFLSQFSEFKDNEVLDNVAYHHYKELAKANLDNDNTAYITYIADNIASGIDRRDIIEEGDEEYEKQLFNFDKYTPLYSVFNIVNSEKLKQTNGKFKFSNESNIEYPKTENIQYSSGNYTTLMKDMSHDLEHKLSIKEGTFPSLLQWTESLWQYVPSSTNKNQLIDISLYDHSRITCAIASCIFDYLNENNIHNYKDELFSKYENTKSFYQKEAFLLLSMDMSGIQDFIYNISGSKALKSLRSRSFYLELMLEVIVDQLLERLELARANLLYTGGGHAYLLVSNTDKVKKKITQFNNELKKWFMSEFTTDLSLSMAFEKCSGDDLMNTSGNYRTIWRNVSSKLSDIKAHKYSAEDILKLNHFHSYGDRECKECLRSDIDINDDGLCSICEGIINISNDLRDKSFFVLSETGKLKMPFNKFISVIDYEEAEMLVQNNNQVRIYSKNKPYIGIGISTNLWMCDYDYASQNQDMREKGIGSYVDREEGVKRLGVVRADIDNLGATFISGIPEKYNSISRTATLSRQLSLFFKYELNHLLENYQITAIYSGGDDLFLIGAWDDIIEASIYINDKFKEFTLDKLTLSAGVGMFSGKYPVSKMAFETGRLEEAAKTGEKNQISLWLQEKVYNWDEFKKNILEEKLLVLQQGFSQTDEHGKAFIYKMLALLRNNEAINIARLAYLLARSKMNEDFTSKIFNWAQNDKDKNQLITALEYYIYQIREAD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Staphylococcus epidermidis RP62A CRISPR RNA: Repeat plus Spacer sequence 2 g 37 NA ACGAGAACUAGUAAUAAUUGUCAUUUGCAUACGUUAC
CRISPR non-self RNA target l 40 NA AGCCUGGUAACGUAUGCAAAUGACAAUUAUUACUAUCCAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-09
Deposition Author(s): Ferrell, S.H. , Mondragon, A. , Smith, E.M. , Tokars, V.L.