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FASTA Sequence PDB Format mmCIF Format
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7UV9

Kdm2a-nucleosome structure stabilized by h3k36c-unc8015 covalent conjugate

PDB DOI: 10.2210/pdb7uv9/pdb

Classification: GENE REGULATION/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-04-29
Deposition Author(s): Azzam, D.N. , Budziszewski, G.R. , Foley, C.A. , Frye, S.V. , James, L.I. , Mcginty, R.K. , Skrajna, A. , Spangler, C.J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

7uv9
Literature

Kdm2a-nucleosome structure stabilized by h3k36c-unc8015 covalent conjugate

Azzam, D.N. , Budziszewski, G.R. , Foley, C.A. , Frye, S.V. , James, L.I. , Mcginty, R.K. , Skrajna, A. , Spangler, C.J.

Primary Citation of Related Structures: 7UV9


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVCKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 135 Homo Sapiens , Synthetic Construct ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVCKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLAAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 102 Homo Sapiens , Synthetic Construct SGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 1 C 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2A type 1 G 129 Homo Sapiens , Synthetic Construct SGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHHKAKGK
Histone H2B type 1-C/E/F/G/I D 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 1-C/E/F/G/I H 125 Homo Sapiens , Synthetic Construct PEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Lysine-specific demethylase 2A K 692 Homo Sapiens , Synthetic Construct GSEPEEERIRYSQRLRGTMRRRYEDDGISDDEIEGKRTFDLEEKLHTNKYNANFVTFMEGKDFNVEYIQRGGLRDPLIFKNSDGLGIKMPDPDFTVNDVKMCVGSRRMVDVMDVNTQKGIEMTMAQWTRYYETPEEEREKLYNVISLEFSHTRLENMVQRPSTVDFIDWVDNMWPRHLKESQTESTNAILEMQYPKVQKYCLMSVRGCYTDFHVDFGGTSVWYHIHQGGKVFWLIPPTAHNLELYENWLLSGKQGDIFLGDRVSDCQRIELKQGYTFVIPSGWIHAVYTPTDTLVFGGNFLHSFNIPMQLKIYNIEDRTRVPNKFRYPFYYEMCWYVLERYVYCITNRSHLTKEFQKESLSMDLELNGLESGNGDEEAVDREPRRLSSRRSVLTSPVANGVNLDYDGLGKTCRSLPSLKKTLAGDSSSDCSRGSHNGQVWDPQCAPRKDRQVHLTHFELEGLRCLVDKLESLPLHKKCVPTGIEDEDALIADVKILLEELANSDPKLALTGVPIVQWPKRDKLKFPTRPKVRVPTIPITKPHTMKPAPRLTPVRPAAASPIVSGARRRRVRCRKCKACVQGECGVCHYCRDMKKFGGPGRMKQSCVLRQCLAPRLPHSVTCSLCGEVDQNEETQDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQEDSSEKAQHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (185-MER) i 185 NA ATCGCTGTTCAATACATGCACAGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCCAGGGCGGCCGCGTATAGGGAT
DNA (185-MER) j 185 NA ATCCCTATACGCGGCCGCCCTGGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCTGTGCATGTATTGAACAGCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-29
Deposition Author(s): Azzam, D.N. , Budziszewski, G.R. , Foley, C.A. , Frye, S.V. , James, L.I. , Mcginty, R.K. , Skrajna, A. , Spangler, C.J.