The cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - full complex focused refinement of stalk
PDB DOI: 10.2210/pdb7uus/pdb
Classification: OXIDOREDUCTASE Organism(s): Mycolicibacterium Smegmatis Mc2 155
Deposited: 2022-04-28 Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.
The cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - full complex focused refinement of stalk
Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.
Primary Citation of Related Structures: 7UUS
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Hydrogenase-2, large subunit | A | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | C | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | E | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | G | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | I | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | K | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | M | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, large subunit | O | 515 | Mycolicibacterium Smegmatis Mc2 155 | TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH |
Hydrogenase-2, small subunit | B | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | D | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | F | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | H | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | J | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | L | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | N | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
Hydrogenase-2, small subunit | P | 369 | Mycolicibacterium Smegmatis Mc2 155 | MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV |
[NiFe]-Hydrogenase Huc Membrane Associated Subunit | Q | 188 | Mycolicibacterium Smegmatis Mc2 155 | ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV |
[NiFe]-Hydrogenase Huc Membrane Associated Subunit | R | 188 | Mycolicibacterium Smegmatis Mc2 155 | ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV |
[NiFe]-Hydrogenase Huc Membrane Associated Subunit | S | 188 | Mycolicibacterium Smegmatis Mc2 155 | ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV |
[NiFe]-Hydrogenase Huc Membrane Associated Subunit | T | 188 | Mycolicibacterium Smegmatis Mc2 155 | ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV |
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-04-28 Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.