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7UUS

The cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - full complex focused refinement of stalk

PDB DOI: 10.2210/pdb7uus/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycolicibacterium Smegmatis Mc2 155

Deposited: 2022-04-28
Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 8.0 Å

7uus
Literature

The cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - full complex focused refinement of stalk

Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.

Primary Citation of Related Structures: 7UUS


Proteins
Molecule Chains Sequence Length Organism Sequence
Hydrogenase-2, large subunit A 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit C 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit E 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit G 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit I 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit K 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit M 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit O 515 Mycolicibacterium Smegmatis Mc2 155 TELDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, small subunit B 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit D 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit F 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit H 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit J 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit L 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit N 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit P 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
[NiFe]-Hydrogenase Huc Membrane Associated Subunit Q 188 Mycolicibacterium Smegmatis Mc2 155 ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV
[NiFe]-Hydrogenase Huc Membrane Associated Subunit R 188 Mycolicibacterium Smegmatis Mc2 155 ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV
[NiFe]-Hydrogenase Huc Membrane Associated Subunit S 188 Mycolicibacterium Smegmatis Mc2 155 ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV
[NiFe]-Hydrogenase Huc Membrane Associated Subunit T 188 Mycolicibacterium Smegmatis Mc2 155 ASNGHSAGQNAIDELPDISPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKALNAADTPIPALAALKDVDLAGLANSLATLSGGLVKATPALNAVLDSLTDQRGAEVLSALGDALVAARTSAPPAPRGVRGMWKTLRAAAKDPDVGRGVSYLIEVARVFGSKV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-28
Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.