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7UTD

The 2.19-angstrom cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - complex minus stalk

PDB DOI: 10.2210/pdb7utd/pdb

Classification: OXIDOREDUCTASE
Organism(s): Mycolicibacterium Smegmatis Mc2 155

Deposited: 2022-04-26
Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.19 Å

7utd
Literature

The 2.19-angstrom cryoem structure of the [nife]-hydrogenase huc from mycobacterium smegmatis - complex minus stalk

Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.

Primary Citation of Related Structures: 7UTD


Proteins
Molecule Chains Sequence Length Organism Sequence
Hydrogenase-2, large subunit A 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit C 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit E 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit G 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit I 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit K 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit M 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, large subunit O 513 Mycolicibacterium Smegmatis Mc2 155 LDLFVSPLGRVEGDLDVRVTINDGVVTSAWTEAAMFRGFEIILRGKDPQAGLIVCPRICGICGGSHLYKSAYALDTAWRTHMPPNATLIRNICQACETLQSIPRYFYALFAIDLTNKNYAKSKLYDEAVRRFAPYVGTSYQPGVVLSAKPVEVYAIFGGQWPHSSFMVPGGVMSAPTLSDVTRAIAILEHWNDNWLEKQWLGCSVDRWLENKTWNDVLAWVDENESQYNSDCGFFIRYCLDVGLDKYGQGVGNYLATGTYFEPSLYENPTIEGRNAALIGRSGVFADGRYFEFDQANVTEDVTHSFYEGNRPLHPFEGETIPVNPEDGRRQGKYSWAKSPRYAVPGLGNVPLETGPLARRMAASAPDAETHQDDDPLFADIYNAIGPSVMVRQLARMHEGPKYYKWVRQWLDDLELKESFYTKPVEYAEGKGFGSTEAARGALSDWIVIEDSKIKNYQVVTPTAWNIGPRDASEVLGPIEQALVGSPIVDAEDPVELGHVARSFDSCLVCTVH
Hydrogenase-2, small subunit B 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit D 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit F 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit H 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit J 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit L 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit N 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Hydrogenase-2, small subunit P 369 Mycolicibacterium Smegmatis Mc2 155 MSAWSHPQFEKGGGSGGGSGGSAWSHPQFEKSGGGGGENLYFQGSGGASVLWFQGGACSGNTMSFLNADEPNVVDLIVDFGLDLLWHPSLGLELGNNAQKVFWDCAKGERPLDIFVFEGTVIEAPNGTGQMDMFAGRPMKDWVTDLAGAAQIVVAIGDCACFGGIPAMEPNPSGSTGLQFHKREKGGFLGPDFRSKMGLPVINVPGCPAHPDWITQILVALATGRAGDITLDDLHRPETFFKTFTQTGCTRVQFFEYKQSTLSFGEGTRTGCLFYEFGCRGPMTHSPCNRILWNRQSSKTRAGMPCLGCTEPEFPHFDLAPGTVFKTQKVSGMIPKEVPEGTDHLTYMGLAAAARIAAPQWSKEDMFVV
Type 2 [NiFe]-hydrogenase Huc membrane adapter subunit Q 60 Mycolicibacterium Smegmatis Mc2 155 SPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKAL
Type 2 [NiFe]-hydrogenase Huc membrane adapter subunit R 60 Mycolicibacterium Smegmatis Mc2 155 SPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKAL
Type 2 [NiFe]-hydrogenase Huc membrane adapter subunit S 60 Mycolicibacterium Smegmatis Mc2 155 SPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKAL
Type 2 [NiFe]-hydrogenase Huc membrane adapter subunit T 60 Mycolicibacterium Smegmatis Mc2 155 SPVDGIRRRLDDPQVAEALNSLLDHADLLAVLVKGLDGFVRRGDDIANNLTSAIGELKAL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-26
Deposition Author(s): Greening, C. , Grinter, R. , Kropp, A. , Venugopal, H.