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FASTA Sequence PDB Format mmCIF Format
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7UMT

Structure of the vp5*/vp8* assembly from the human rotavirus strain cdc-9 - reversed conformation

PDB DOI: 10.2210/pdb7umt/pdb

Classification: VIRUS
Organism(s): Rotavirus

Deposited: 2022-04-07
Deposition Author(s): Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

7umt
Literature

Structure of the vp5*/vp8* assembly from the human rotavirus strain cdc-9 - reversed conformation

Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.

Primary Citation of Related Structures: 7UMT


Proteins
Molecule Chains Sequence Length Organism Sequence
Outer capsid protein VP5* 1 529 Rotavirus AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL
Outer capsid protein VP5* 2 529 Rotavirus AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL
Outer capsid protein VP5* 3 529 Rotavirus AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL
Outer capsid glycoprotein VP7 A 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 B 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 C 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 D 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 E 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 F 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 G 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 H 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 I 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 J 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 K 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 L 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 M 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 N 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 O 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 P 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 Q 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Outer capsid glycoprotein VP7 R 326 Rotavirus MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-07
Deposition Author(s): Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.