7UMS
Structure of the vp5*/vp8* assembly from the human rotavirus strain cdc-9 in complex with antibody 41 - upright conformation
PDB DOI: 10.2210/pdb7ums/pdb
Classification: VIRUS Organism(s): Homo Sapiens , Rotavirus
Deposited: 2022-04-07 Deposition Author(s): Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.5 Å
Structure of the vp5*/vp8* assembly from the human rotavirus strain cdc-9 in complex with antibody 41 - upright conformation
Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.
Primary Citation of Related Structures: 7UMS
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Outer capsid protein VP8* | T | 230 | Homo Sapiens , Rotavirus | MASLIYRQLLTNSYSVDLYDEIEQIGSGKTQNVTINPGPFAQTRYAPVNWDHGEINDSTTVEPILDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVTPVDRQYMIFGESKQFNVSNDSNKWKFLEMFRSSSQNEFYNRRTLTSDTRLVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGLPPIQNTR |
| Outer capsid protein VP8* | U | 230 | Homo Sapiens , Rotavirus | MASLIYRQLLTNSYSVDLYDEIEQIGSGKTQNVTINPGPFAQTRYAPVNWDHGEINDSTTVEPILDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVTPVDRQYMIFGESKQFNVSNDSNKWKFLEMFRSSSQNEFYNRRTLTSDTRLVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGLPPIQNTR |
| Outer capsid protein VP8* | V | 230 | Homo Sapiens , Rotavirus | MASLIYRQLLTNSYSVDLYDEIEQIGSGKTQNVTINPGPFAQTRYAPVNWDHGEINDSTTVEPILDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVTPVDRQYMIFGESKQFNVSNDSNKWKFLEMFRSSSQNEFYNRRTLTSDTRLVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGLPPIQNTR |
| Outer capsid protein VP5* | 1 | 529 | Homo Sapiens , Rotavirus | AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL |
| Outer capsid protein VP5* | 2 | 529 | Homo Sapiens , Rotavirus | AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL |
| Outer capsid protein VP5* | 3 | 529 | Homo Sapiens , Rotavirus | AQVDEDIIVSKTSLWKEMQYNRDIIIRFKFGNSIVKMGGLGYKWSEISYKAANYQYNYLRDGEQVTAHTTCSVNGVNNFSYNGGFLPTDFGISRYEVIKENSYVYVDYWDDSKAFRNIVYVRSLAANLNSVRCTGGSYHFSLPVGAWPVINGGAVSLHFAGVTLSTQFTDFVSLNSLRFRFSLTVDEPPFSILRTRTVNLYGLPAANPNNGNEYYEISGRFSLISLVPTNDDYQTPIMNSVTVRQDLERQLTNLREEFNSLSQEIAMAQLIDLALLPLDMFSMFSGIKSTIDLTKSMATSVMKKFRKSKLATSISEMTNSLSDAASSASRNVSIRSNLSAISNWTNVSNDVSNVTNSLNDISTQTSTIGKKLRLKEMITQTEGMSFDDISAAVLKTKIDMSTQIGKNTLPDIVTEASEKFIPKRSYRILKDDEVMEINTEGKFFAYKINTFDEVPFDVNKFAELVTDSPVISAIIDFKTLKNLNDNYGITRTEALNLIKSNPNMLRNFINQNNPIIRNRIEQLILQCKL |
| Fab 41 heavy chain | 4 | 236 | Homo Sapiens , Rotavirus | EVQLVESGGGPVQPGGSLKLSCAASGFTFSNYEMYWVRQAPGKGLEWVSYISTSPAITYYADSVRGRFTISRDNAKSSLYLHMNSLRAEDTAVYYCATISHQQFSSGWNAWFDPWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH |
| Fab 41 heavy chain | 6 | 236 | Homo Sapiens , Rotavirus | EVQLVESGGGPVQPGGSLKLSCAASGFTFSNYEMYWVRQAPGKGLEWVSYISTSPAITYYADSVRGRFTISRDNAKSSLYLHMNSLRAEDTAVYYCATISHQQFSSGWNAWFDPWGQGTLVTVSGASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDKHHHHHH |
| Fab 41 light chain | 5 | 217 | Homo Sapiens , Rotavirus | NFMLTQPHSVSESPGKTVTISCTGSSGSIASNYVQWYRQRPGSAPTTVIYENYQRPSGVPARFSGSIDRSSNSASLTISGLQTDDEADYYCQSYDNNNLWVFGGGTKLTVLGQPKGAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Fab 41 light chain | 7 | 217 | Homo Sapiens , Rotavirus | NFMLTQPHSVSESPGKTVTISCTGSSGSIASNYVQWYRQRPGSAPTTVIYENYQRPSGVPARFSGSIDRSSNSASLTISGLQTDDEADYYCQSYDNNNLWVFGGGTKLTVLGQPKGAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS |
| Outer capsid glycoprotein VP7 | A | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | B | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | C | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | D | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | E | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | F | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | G | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | H | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | I | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | J | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | K | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | L | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | M | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | N | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | O | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | P | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | Q | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
| Outer capsid glycoprotein VP7 | R | 326 | Homo Sapiens , Rotavirus | MYGIEYTTILIFLISIILLNYILKSVTRIMDYIIYRFLLIFVALFALTKAQNYGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQIVQVMSKRSRSLNSAAFYYRV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-04-07 Deposition Author(s): Bessey, T. , Greenberg, H.B. , Harrison, S.C. , Jenni, S. , Jiang, B. , Salgado, E.N. , Schmidt, A.G. , Wang, Y. , Zongli, L.