7UM0
Structure of the phage ar9 non-virion rna polymerase holoenzyme in complex with two dna oligonucleotides containing the ar9 p077 promoter as determined by cryo-em
PDB DOI: 10.2210/pdb7um0/pdb
Classification: TRANSCRIPTION Organism(s): Bacillus Phage Ar9 , Synthetic Construct
Deposited: 2022-04-05 Deposition Author(s): Fraser, A. , Leiman, P.G. , Sokolova, M.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Structure of the phage ar9 non-virion rna polymerase holoenzyme in complex with two dna oligonucleotides containing the ar9 p077 promoter as determined by cryo-em
Fraser, A. , Leiman, P.G. , Sokolova, M.L.
Primary Citation of Related Structures: 7UM0
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA-directed RNA polymerase subunit | A | 464 | Bacillus Phage Ar9 , Synthetic Construct | MDILENYVSFDEQARDINIAFDKLFGRDDISHMNNFSINKRSYYNCLDQISDDLNLVLNKYNDLAYSLLEIRYNMATKENYTHMEFYSDIERLFIKNEKLLNVISDIVEEEYDLDLNQASKGKKINIELQVTDNLNKIYLKSSVLMRILIPILCDFNCDDDINEVLVYDIFKEVIKSFDDGKKNALNKLYKIIYSRVFETKYSDVVIWTYLKNMSTDLMIIVKDYFKVIIKKIFPKLKHNSSVISYLDVVIKQKLKYLFTFKYPISYKPLKAETTDDEELSEQERMEINLLRNDQGNSIINECSIKQEIAKIKKKYNVTDEVMKEFINGRELNSIQIYLVKIYYSNKFKVNSNKNDIFYLLYGMTRELGEMNFSIIPEILSCAIAPNVRKMNNRKKLVDKIIHSDKYSYLLKSYLPIKNILDKNNVILQLMTIKNAKFMNKENKEVDFSTDHLAEEVLDMLLCI |
| DNA-directed RNA polymerase | D | 631 | Bacillus Phage Ar9 , Synthetic Construct | MEKTYNLNDILLSNEYEKIKEDIKEEIINDMASKKVKYSNTSEFAKNDFLKDEFIDLVVDGETYEITYGNLITLLIVARPFNHFKVPMTEDLLFDLSDLKEYQNYYTTLLEHFGYSNEIKSIIKDVISELAIFSGDINVTFGNTVSIKSLIDLGNKVKRFRELLHYRLPNDEALEFNDIEAIIKKNLDEIMKILSETDNMLRYYIDSGAGINSKQFGQVLSLVGSKPDLFGKIIPYPINTSFLRGLDVRSFYINALGARKALITNYQQVRNSGYLTRKISMLLMDTKLIDLDDCGSHENNYLSINVENKDVLKRFSKRSYLNNNGELVEIDINDESLIGQVIKIPSPTTCASNEGVCRKCYGKLFDINKDLNIGMIAVLLLTDPLTQRLLSAKHLLETRSSKIDWGTNFEENFIVNRNLIYPKVYNGTVIIKEDDFKEDEETEEQVFDTFTLKSGNRFISISSPMRLFLNKDLKKQLDESFYNIEEMQFEIPLNKLDEGDSFATFIMDNNELSKPLREIKDLIETNKYIKDHNVNEVVNYFIYLLNESGINIQSVHSELIIREMMKLDDSDRTQFKNDKMPDYEIFRITDANLKGDSLSRSLLFEQVKKQLTTLDYDTFNKTKSSILDKLL |
| DNA-directed RNA polymerase | C | 665 | Bacillus Phage Ar9 , Synthetic Construct | MDDISVIKNEDYEGSHRFLAEELLMPNANKTDGNRSTMFCSHLAQAVTLQKAEPPLVYTNFENQVGKYSTAGYRKANSNYKVIEKIYKNDYNYVLIVQDQETGEYTLFERAECEFLTEHYGFQWDNDKIDSLKKDDTIEKDTVLYKNTCYDENMNFGYGVNLNAAYFSYKNETLEDAIVISESAAKKLGTFSVNKVKVSVNTNDILLNLYGDNENYKGFPDIGEHIKNQIIASRRRFDYNTALYELKNLNEMRDSDTPFFADGKIVDIEIFSNVPEEELKVQKYNEQVLYYINKQKEFSNNVYQKLKKIVEGKDNNVSDKLLHFYNNCKMRIDENISYTYQNSKFSGFIMEFTILEEEPLNKGSKITGRYGNKGVISKILPDDQMPTVAEGRFKGLKADICLNPLGVFNRLNPSQLIEQELNWIAKFIRKDMEEAGSNEEKVSILLDFLNRVNKEETELMEEFINSLNKTELEEFLNDIIENGIPICQKPFFGNIGLDELWELYNHYDHIDYFKCEGISTPLIIGEIYMVRLKHEPHSKFSARSTSFMNLRGLPAKSKNFKEHKDLYSKTPVRIGNMEISNLSLTNEMGSIMDMLNSYSNNETNRRELIMQLLTGNPFDTNIDLSDVESGTSKILKSLFTCLGLSIDDVEEEWENKLNGKVEDEK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*GP*UP*U)-3') | b | 3 | NA | GUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-04-05 Deposition Author(s): Fraser, A. , Leiman, P.G. , Sokolova, M.L.