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FASTA Sequence PDB Format mmCIF Format
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7UGN

Cryo-em structure of bg24 inferred germline fabs with germline cdr3s and 10-1074 fabs in complex with hiv-1 env immunogen bg505-sosipv4.1-gt1 - class 1

PDB DOI: 10.2210/pdb7ugn/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1

Deposited: 2022-03-25
Deposition Author(s): Bjorkman, P.J. , Dam, K.A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

7ugn
Literature

Cryo-em structure of bg24 inferred germline fabs with germline cdr3s and 10-1074 fabs in complex with hiv-1 env immunogen bg505-sosipv4.1-gt1 - class 1

Bjorkman, P.J. , Dam, K.A.

Primary Citation of Related Structures: 7UGN


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 A 451 Homo Sapiens , Human Immunodeficiency Virus 1 ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV
Envelope glycoprotein gp120 B 451 Homo Sapiens , Human Immunodeficiency Virus 1 ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV
Envelope glycoprotein gp120 C 451 Homo Sapiens , Human Immunodeficiency Virus 1 ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV
Envelope glycoprotein gp41 D 129 Homo Sapiens , Human Immunodeficiency Virus 1 VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 E 129 Homo Sapiens , Human Immunodeficiency Virus 1 VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 F 129 Homo Sapiens , Human Immunodeficiency Virus 1 VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
BG24 inferred germline Fab with germline CDR3s heavy chain G 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS
BG24 inferred germline Fab with germline CDR3s heavy chain H 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS
BG24 inferred germline Fab with germline CDR3s heavy chain I 125 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS
BG24 inferred germline Fab with germline CDR3s light chain J 106 Homo Sapiens , Human Immunodeficiency Virus 1 QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS
BG24 inferred germline Fab with germline CDR3s light chain K 106 Homo Sapiens , Human Immunodeficiency Virus 1 QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS
BG24 inferred germline Fab with germline CDR3s light chain L 106 Homo Sapiens , Human Immunodeficiency Virus 1 QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS
10-1074 Fab heavy chain M 133 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA
10-1074 Fab heavy chain N 133 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA
10-1074 Fab heavy chain O 133 Homo Sapiens , Human Immunodeficiency Virus 1 QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA
10-1074 Fab light chain P 107 Homo Sapiens , Human Immunodeficiency Virus 1 VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG
10-1074 Fab light chain Q 107 Homo Sapiens , Human Immunodeficiency Virus 1 VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG
10-1074 Fab light chain R 107 Homo Sapiens , Human Immunodeficiency Virus 1 VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-03-25
Deposition Author(s): Bjorkman, P.J. , Dam, K.A.