Cryo-em structure of bg24 inferred germline fabs with germline cdr3s and 10-1074 fabs in complex with hiv-1 env immunogen bg505-sosipv4.1-gt1 - class 1
PDB DOI: 10.2210/pdb7ugn/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1
Deposited: 2022-03-25 Deposition Author(s): Bjorkman, P.J. , Dam, K.A.
Cryo-em structure of bg24 inferred germline fabs with germline cdr3s and 10-1074 fabs in complex with hiv-1 env immunogen bg505-sosipv4.1-gt1 - class 1
Primary Citation of Related Structures: 7UGN
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Envelope glycoprotein gp120 | A | 451 | Homo Sapiens , Human Immunodeficiency Virus 1 | ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV |
Envelope glycoprotein gp120 | B | 451 | Homo Sapiens , Human Immunodeficiency Virus 1 | ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV |
Envelope glycoprotein gp120 | C | 451 | Homo Sapiens , Human Immunodeficiency Virus 1 | ENLWVTVYYGVPVWKDAETTLFCASDAKAYKKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNIDDMRGELKNCSFNMTTELRDKRQKVHALFYKLDIVPINENQNTSYRLINCNTAAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSEDIRNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQWFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCDTSGLFNSTWISNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTDSTTETFRPSGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVV |
Envelope glycoprotein gp41 | D | 129 | Homo Sapiens , Human Immunodeficiency Virus 1 | VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | E | 129 | Homo Sapiens , Human Immunodeficiency Virus 1 | VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
Envelope glycoprotein gp41 | F | 129 | Homo Sapiens , Human Immunodeficiency Virus 1 | VFLGFLGAAGSTMGAASMTLTVQARNLLSLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD |
BG24 inferred germline Fab with germline CDR3s heavy chain | G | 125 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS |
BG24 inferred germline Fab with germline CDR3s heavy chain | H | 125 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS |
BG24 inferred germline Fab with germline CDR3s heavy chain | I | 125 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLVQSGAEVKKPGASVKVSCKASGYTFTGYYMHWVRQAPGQGLEWMGWINPNSGGTNYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCATQLELDSSAGYAFDIWGQGTMVTVSSAS |
BG24 inferred germline Fab with germline CDR3s light chain | J | 106 | Homo Sapiens , Human Immunodeficiency Virus 1 | QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS |
BG24 inferred germline Fab with germline CDR3s light chain | K | 106 | Homo Sapiens , Human Immunodeficiency Virus 1 | QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS |
BG24 inferred germline Fab with germline CDR3s light chain | L | 106 | Homo Sapiens , Human Immunodeficiency Virus 1 | QSALTQPRSVSGSPGQSVTISCTGTSSDVGGYNYVSWYQQHPGKAPKLMIYDVSKRPSGVPDRFSGSKSGNTASLTISGLQAEDEADYYCSSYEYFGGGTKLTVLS |
10-1074 Fab heavy chain | M | 133 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA |
10-1074 Fab heavy chain | N | 133 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA |
10-1074 Fab heavy chain | O | 133 | Homo Sapiens , Human Immunodeficiency Virus 1 | QVQLQESGPGLVKPSETLSVTCSVSGDSMNNYYWTWIRQSPGKGLEWIGYISDRESATYNPSLNSRVVISRDTSKNQLSLKLNSVTPADTAVYYCATARRGQRIYGVVSFGEFFYYYSMDVWGKGTTVTVSSA |
10-1074 Fab light chain | P | 107 | Homo Sapiens , Human Immunodeficiency Virus 1 | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG |
10-1074 Fab light chain | Q | 107 | Homo Sapiens , Human Immunodeficiency Virus 1 | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG |
10-1074 Fab light chain | R | 107 | Homo Sapiens , Human Immunodeficiency Virus 1 | VRPLSVALGETARISCGRQALGSRAVQWYQHRPGQAPILLIYNNQDRPSGIPERFSGTPDINFGTRATLTISGVEAGDEADYYCHMWDSRSGFSWSFGGATRLTVLG |
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-03-25 Deposition Author(s): Bjorkman, P.J. , Dam, K.A.