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7U3B

Structure of s. venezuelae glgx bound to c-di-gmp and acarbose (ph 8.5)

PDB DOI: 10.2210/pdb7u3b/pdb

Classification: HYDROLASE
Organism(s): Streptomyces Venezuelae

Deposited: 2022-02-26
Deposition Author(s): Schumacher, M.A. , Tschowri, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.6 Å

7u3b
Literature

Structure of s. venezuelae glgx bound to c-di-gmp and acarbose (ph 8.5)

Schumacher, M.A. , Tschowri, N.

Primary Citation of Related Structures: 7U3B


Proteins
Molecule Chains Sequence Length Organism Sequence
Glycogen debranching enzyme GlgX C 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX D 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX E 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX F 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX G 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX H 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX I 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Glycogen debranching enzyme GlgX J 709 Streptomyces Venezuelae GSHMQVWPGQAYPLGATYDGAGTNFAVFSEAAHRIELCLLHDDGSETAVELRETDAFVRHAYLPGVMPGQRYGFRVHGPYAPERGLRCNAAKLLLDPYARAVSGRVRWGEAVYGYPFGRPDARNDLDSAPDTMTSVVVNPYFDWGDDRRPRTEYHHTVIYEAHVKGLTMLHPDLPEELRGTYAGLAHPSVIGHLRELGVTALELMPVHQFVNDHRLVDAGLSNYWGYNTIGFFAPHNAYASWGDRGQQVLEFKSAVRALHQAGIEVILDVVYNHTAEGNHLGPTLSMRGLDNPSYYRLADDPRYYMDTTGTGNSLLMRSPHVLQLIMDSLRYWVTEMHVDGFRFDLAATLARQFHEVDRLSSFFDLVQQDPVVSQVKLIAEPWDVGEGGYQVGNFPPLWTEWNGKYRDCVRDLWRGEPRTLAEFASRLTGSSDLYQDDGRRPLASVNFVTCHDGFTLRDLVSYNEKRNEANGEGNRDGENYNRSWNCGEEGETEDVGITELRARQMRNFLATLMLSQGVPMLSHGDEFGRTQGGNNNAYCQDNEVSWVRWPKENSEAEATLLRFTRSMVRLRREHPVFRRRRFFHGRPVEGTHDELTDIAWFTPEGEEMTSRDWQAAHAQALTVFLNGNAISEPGTQGERIADDSFLLMFNASAKELEFVVPDSHGRYWRMVVDTSDPEGMPPQQGPELAGGERVTLAPLSLTVLRRPA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-02-26
Deposition Author(s): Schumacher, M.A. , Tschowri, N.