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7U0D

Local refinement of cryo-em structure of the interface of the omicron rbd in complex with antibodies b-182.1 and a19-46.1

PDB DOI: 10.2210/pdb7u0d/pdb

Classification: Vral Protein/IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Gammaretrovirus

Deposited: 2022-02-17
Deposition Author(s): Kwong, P.D. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.8 Å

7u0d
Literature

Local refinement of cryo-em structure of the interface of the omicron rbd in complex with antibodies b-182.1 and a19-46.1

Kwong, P.D. , Zhou, T.

Primary Citation of Related Structures: 7U0D


Proteins
Molecule Chains Sequence Length Organism Sequence
Surface glycoprotein B 196 Salmonella Enterica , Gammaretrovirus NITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCG
Heavy chain of SARS-CoV-2 antibody A19-46.1 M 231 Salmonella Enterica , Gammaretrovirus QVQLVESGGGVVQPGRSLRLSCAASGFTLSSYGMHWVRQAPGKGLEWVAVISYDGSNKYYVDSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARGWAYWELLPDYYYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
Light chain of SARS-CoV-2 antibody A19-46.1 N 216 Salmonella Enterica , Gammaretrovirus QTVVTQEPSFSVSPGGTVTLTCGLSSGSVSTAYFPSWYQQTPGQAPRTLIYGTNTRSSGVPDRFSGSILGNKAALTITGAQADDESDYYCVLYMGRGIVVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Heavy chain of SARS-CoV-2 antibody B1-182.1 O 228 Salmonella Enterica , Gammaretrovirus QMQLVQSGPEVKKPGTSVKVSCKASGFTFTSSAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRSEDTAVYYCAAPYCSGGSCFDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK
Light chain of SARS-CoV-2 antibody B1-182.1 P 215 Salmonella Enterica , Gammaretrovirus EIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGFPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGNSPWTFGQGTKVEIRRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-02-17
Deposition Author(s): Kwong, P.D. , Zhou, T.