PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7TXD

Cryo-em structure of bg505 sosip hiv-1 env trimer in complex with cd4 receptor (d1d2) and broadly neutralizing darpin bnd.9

PDB DOI: 10.2210/pdb7txd/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct

Deposited: 2022-02-08
Deposition Author(s): Cerutti, G. , Gorman, J. , Kwong, P.D. , Shapiro, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.87 Å

7txd
Literature

Cryo-em structure of bg505 sosip hiv-1 env trimer in complex with cd4 receptor (d1d2) and broadly neutralizing darpin bnd.9

Cerutti, G. , Gorman, J. , Kwong, P.D. , Shapiro, L.

Primary Citation of Related Structures: 7TXD


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 A 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Envelope glycoprotein gp120 C 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Envelope glycoprotein gp120 E 481 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLQCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRR
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 D 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
Envelope glycoprotein gp41 F 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
T-cell surface glycoprotein CD4 G 185 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASNT
T-cell surface glycoprotein CD4 H 185 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASNT
T-cell surface glycoprotein CD4 I 185 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASNT
Broadly neutralizing darpin bnd.9 J 196 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GLNDIFEAQKIEWHEGSGGSDLGKKLLEAAYYGQLDEVRILMANGADVNAVDVHGITPLHLAAYFGHLEIVEVLLKTGADVNARDNRGITPLHLAAAMGHLEIVEVLLKAGADVNAFDEAGDTPLHLAALKGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDIAEVLQKAAKLNLEVLFQGPHHHHHHHH
Broadly neutralizing darpin bnd.9 K 196 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GLNDIFEAQKIEWHEGSGGSDLGKKLLEAAYYGQLDEVRILMANGADVNAVDVHGITPLHLAAYFGHLEIVEVLLKTGADVNARDNRGITPLHLAAAMGHLEIVEVLLKAGADVNAFDEAGDTPLHLAALKGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDIAEVLQKAAKLNLEVLFQGPHHHHHHHH
Broadly neutralizing darpin bnd.9 L 196 Homo Sapiens , Human Immunodeficiency Virus 1 , Synthetic Construct GLNDIFEAQKIEWHEGSGGSDLGKKLLEAAYYGQLDEVRILMANGADVNAVDVHGITPLHLAAYFGHLEIVEVLLKTGADVNARDNRGITPLHLAAAMGHLEIVEVLLKAGADVNAFDEAGDTPLHLAALKGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDIAEVLQKAAKLNLEVLFQGPHHHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-02-08
Deposition Author(s): Cerutti, G. , Gorman, J. , Kwong, P.D. , Shapiro, L.