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FASTA Sequence PDB Format mmCIF Format
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7TRA

Cascade complex from type i-a crispr-cas system

PDB DOI: 10.2210/pdb7tra/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct

Deposited: 2022-01-28
Deposition Author(s): Hu, C. , Ke, A. , Majumdar, S. , Mclean, J. , Nam, K.H. , Ni, D. , Stahlberg, H. , Terns, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

7tra
Literature

Cascade complex from type i-a crispr-cas system

Hu, C. , Ke, A. , Majumdar, S. , Mclean, J. , Nam, K.H. , Ni, D. , Stahlberg, H. , Terns, M.

Primary Citation of Related Structures: 7TRA


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated helicase Cas3 A 572 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct ELTGFEPYDYQLRAWEKIREIMNNGGKVIIEVPTAGGKTETAVMPFFAGIYNNNWPVARLVYVLPTRSLVEKQAERLRNLVYKLLQLKGKSKEEAEKLARELVVVEYGLEKTHAFLGWVVVTTWDAFLYGLAAHRTVGNRFTFPAGAIAQSLVIFDEVQMYQDESMYMPRLLSLVVGILEEANVPLVIMSATIPSKLREMIAGDTEVITVDKNDKNKPSKGNVKVRLVEGDITDVLNDIKKILKNGKKVLVVRNTVRKAVETYQVLKKKLNDTLANPSDALLIHSRFTIGDRREKERALDSARLIVATQVVEAGLDLPNVGLVVTDIAPLDALIQRIGRCARRPGEEGEGIILIPAAAAAAAAAAAAAAAAAAAAAAAAAAAAVVTSTNEYDRVVEIHYGEGKKNFVYVGDIDTARRVLEKKRSKKLPKDLYIIPYSVSPYPDPLVLLTTYDELSKIGEYLADTTKARKALDRVYKFHYENNIVPKEFASYIYFKELKLFSAPPEYEKAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAIDAKYYNSELAAAAAAAAAAAAAAAAAAA
Cas8a B 341 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct FNEFKTPQIDPIFDLYVAYGYVVSLIRGGAKEATLIPHGASYLIQTDVSNEEFRHGLVDALSSMLSLHIALARHSPREGGKLVSDADFSAGANINNVYWDSVPRNLEKLMKDLEKKRSVKGTATIPITLMPSAGKYMLKHFGVQGGNPIKVDLLNYALAWVGFHYYTPYIKYAKGDTTWIHIYQIAPVEEVDMISILSLKDLKMHLPHYYESNLDFLINRRLALLYHLLHSEALELFTEKEFVIHSYTLERSGNNQAIRSFEEEEIGKLMDFLWKLKRRDFYHAIKFIDDLLKKATEGALALIDAIMNERLEGFYTALKLGKKAGVVSSREIVAALEDIIC
Cas11a C 108 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct GGWIRNIGRYLSYLVDDTFEEYAYDVVDGIAKARTQEELLEGVYKALRLAPKLKKKAESKGCPPPRIPSPEDIEALEEKVEQLSNPKDLRKLAVSLALWAFASWNNCP
Cas11a D 108 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct GGWIRNIGRYLSYLVDDTFEEYAYDVVDGIAKARTQEELLEGVYKALRLAPKLKKKAESKGCPPPRIPSPEDIEALEEKVEQLSNPKDLRKLAVSLALWAFASWNNCP
Cas11a E 108 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct GGWIRNIGRYLSYLVDDTFEEYAYDVVDGIAKARTQEELLEGVYKALRLAPKLKKKAESKGCPPPRIPSPEDIEALEEKVEQLSNPKDLRKLAVSLALWAFASWNNCP
Cas11a F 108 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct GGWIRNIGRYLSYLVDDTFEEYAYDVVDGIAKARTQEELLEGVYKALRLAPKLKKKAESKGCPPPRIPSPEDIEALEEKVEQLSNPKDLRKLAVSLALWAFASWNNCP
Cas11a G 108 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct GGWIRNIGRYLSYLVDDTFEEYAYDVVDGIAKARTQEELLEGVYKALRLAPKLKKKAESKGCPPPRIPSPEDIEALEEKVEQLSNPKDLRKLAVSLALWAFASWNNCP
Cas7a H 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a I 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a J 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a K 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a L 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a M 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas7a N 336 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MYVRISGRIRLNAHSLNAQGGGGTNYIEITKTKVTVRTENGWTVVEVPAITGNMLKHWHFVGFVDYFKTTPYGVNLTERALRYNGTRFGQGETTATKANGATVQLNDEATIIKELADADVHGFLAPKTGRRRVSLVKASFILPTEDFIKEVEGERLITAIKHNRVDVDEKGAIGSSKEGTAQMLFSREYATGLYGFSIVLDLGLVGIPQGLPVKFEENQPRPNIVIDPNERKARIESALKALIPMLSGYIGANLARSFPVFKVEELVAIASEGPIPALVHGFYEDYIEANRSIIKNARALGFNIEVFTYNVDLGEDIEATKVSSVEELVANLVKMV
Cas5a O 256 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct MDILLVCLRFPFFSVAKRSYQVRTSFLLPPPSALKGALAKGLILLKPEKYASSSLDEAALKAIKEIESKLVDIKAVSVAPLSPLIRNAFLLKRLRNLESGSNAEKSDAMRREYTFTRELLVAYIFKNLTQEEKNLYLKAAMLIDVIGDTESLATPVWASFVKPEDKKAPLAFSAPYTEIYSLLSSKIQAKGKIRMYIEKMRVSPEYSKTKGPQEEIFYLPIEERRYKRIVYYARIYPPEVEKALTVDGEVLGIWIP
CRISPR-associated endonuclease Cas3-HD Q 219 Escherichia Coli , Pyrococcus Furiosus Dsm 3638 , Synthetic Construct SCKAFQGQTLREHIEAMLAAWEIVKNKYIPSIIRVMKTVGVKFTEEDADKFMKTLIILHDVGKCSEVYQKHLSNNEPLRGFRHELVSAYYAYNILKDMFKDETIAFIGALVVMMHHEPILMGQIRSLDKEELTPEVVLDKLRTFNGVMEGTESFIKSMIKEKLGVIPKVPSPTQEDVLREVIRLSVLARHRPDSGKLRMVVGALLIPLVCDYKGAAAAA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
crRNA (44-MER) r 44 NA AUUGAAAGAGUGCUUCCCCAAACCCUUAACUGGUUGUAACAGUU
Target strand DNA (44-MER) s 44 NA TAAACTGTTACAACCAGTTAAGGGTTGGGGGAAGCACTGGGTCT
Non-Target strand DNA (25-MER) t 25 NA AGACCCAGTTAAAAAAAAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-01-28
Deposition Author(s): Hu, C. , Ke, A. , Majumdar, S. , Mclean, J. , Nam, K.H. , Ni, D. , Stahlberg, H. , Terns, M.