Structure of electron bifurcating ni-fe hydrogenase complex hydabcsl in fmn/nad(h) bound state
PDB DOI: 10.2210/pdb7t30/pdb
Classification: OXIDOREDUCTASE Organism(s): Acetomicrobium Mobile
Deposited: 2021-12-06 Deposition Author(s): Feng, X. , Li, H.
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NiFe hydrogenase subunit A | A | 692 | Acetomicrobium Mobile | MKEITLTIDGKVCKGVQGDTILDVANKNDVYIPTLCYQKGLTPIGACRMCVVQLEGNPKMLPSCTTPAQDGMVVVTKNEKLKDYRRQILELLFAGRNHFCMYCSQSGDCELQRLAIEHEMDSVRFPYLYEDFEVDATDPNLMMDHNRCVLCQRCIRTCSEIVGAHTLDLERRGWQAKVIADLGKRLRESDTCVNCGACAQSCPTGTITIREFAYRGRRSECDAVVESVCPLCAVGCKIKTYVRTGSIVRVEGTGVEEPDGGQLCHMGRWWLPESTERERVTVPLIREGASYREATWEEALALASAEFKKAYDQEKAGAILSSLCTDEELTLFSALFRNALKMKHIDTFDGDIIRGFFKGFMPFREQGVRPFTAAHHILDSDLIITMFADPQKEAPVVASYIRVACLHRNAKLMNLSYGPSPFPGLVDLDIRLPEGQAVPKALSNLAEIIGKISLGPSDMASFGEFEAGAGKALSSYRESIEESARAMGLDPKIAEEVALMLISARRPIFIIGGRATKSHELVTAACNLAVASKAFFEDGLGVVPLLVSANSLGARNTVVSENPWLGRERRDFLYVFSTAMVPEEEEILAAISATRFVVVQTPFKVRPLVNLADILLPAPAWYERSGHFCTIEGERRKLNTIVPPKGEIKSLHYVMDEFAKKLGVKLERPEVSPCEEIFKSQLRASEARIVTL |
| NiFe hydrogenase subunit A | F | 692 | Acetomicrobium Mobile | MKEITLTIDGKVCKGVQGDTILDVANKNDVYIPTLCYQKGLTPIGACRMCVVQLEGNPKMLPSCTTPAQDGMVVVTKNEKLKDYRRQILELLFAGRNHFCMYCSQSGDCELQRLAIEHEMDSVRFPYLYEDFEVDATDPNLMMDHNRCVLCQRCIRTCSEIVGAHTLDLERRGWQAKVIADLGKRLRESDTCVNCGACAQSCPTGTITIREFAYRGRRSECDAVVESVCPLCAVGCKIKTYVRTGSIVRVEGTGVEEPDGGQLCHMGRWWLPESTERERVTVPLIREGASYREATWEEALALASAEFKKAYDQEKAGAILSSLCTDEELTLFSALFRNALKMKHIDTFDGDIIRGFFKGFMPFREQGVRPFTAAHHILDSDLIITMFADPQKEAPVVASYIRVACLHRNAKLMNLSYGPSPFPGLVDLDIRLPEGQAVPKALSNLAEIIGKISLGPSDMASFGEFEAGAGKALSSYRESIEESARAMGLDPKIAEEVALMLISARRPIFIIGGRATKSHELVTAACNLAVASKAFFEDGLGVVPLLVSANSLGARNTVVSENPWLGRERRDFLYVFSTAMVPEEEEILAAISATRFVVVQTPFKVRPLVNLADILLPAPAWYERSGHFCTIEGERRKLNTIVPPKGEIKSLHYVMDEFAKKLGVKLERPEVSPCEEIFKSQLRASEARIVTL |
| NiFe hydrogenase subunit B | B | 597 | Acetomicrobium Mobile | MAIYRAHVLVCRGTGCTASGAPGVMKAFKEELAKKGLDREVMLVETGCHGMCEMGPVVVVYPEGAFYCRVTPEDVPEIVEEHLYKGRIVQRLLYTVPEDMEKVPYYKDIPFYSKQHRIVLSNCGYIDPEKIEEYIARDGYMALGKALLEMTPEEVLEEVKKSGLRGRGGAGFPTGLKWEFAKKASGDKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMTIGAYVIGADEGYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDHIMGTNFSFHLHLKEGAGAFVCGEETALMASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPRIILNGADWFASMGTEKSKGTKIFALTGKITNTGLIEVPMGITIREIIYELGGGILNGKEFKAVQIGGPSGGCLTKEHLDLPIDYESLTAAGAIMGSGGLVVMDEDTCMVDVAKFFLEFTQRESCGKCVPCREGTKQMLLMLQKICNGEGTMDDLSKLEELAHMVKETSLCGLGQTAPNPVITTIRYFRDEYVAHIKDKRCPAKICPALIKYVVDPEKCRKCGLCARNCPVKCISGDRQTPYLINQEKCIKCGTCMQVCPFGAIGKV |
| NiFe hydrogenase subunit B | G | 597 | Acetomicrobium Mobile | MAIYRAHVLVCRGTGCTASGAPGVMKAFKEELAKKGLDREVMLVETGCHGMCEMGPVVVVYPEGAFYCRVTPEDVPEIVEEHLYKGRIVQRLLYTVPEDMEKVPYYKDIPFYSKQHRIVLSNCGYIDPEKIEEYIARDGYMALGKALLEMTPEEVLEEVKKSGLRGRGGAGFPTGLKWEFAKKASGDKKYVICNADEGDPGAFMDRSTLEGDPHSVIEGMTIGAYVIGADEGYIYCRAEYPLAIKRLKIAIAQAEEMGLLGDHIMGTNFSFHLHLKEGAGAFVCGEETALMASIEGRRGMPRPRPPFPAQHGLWGKPTNINNVETWANVPRIILNGADWFASMGTEKSKGTKIFALTGKITNTGLIEVPMGITIREIIYELGGGILNGKEFKAVQIGGPSGGCLTKEHLDLPIDYESLTAAGAIMGSGGLVVMDEDTCMVDVAKFFLEFTQRESCGKCVPCREGTKQMLLMLQKICNGEGTMDDLSKLEELAHMVKETSLCGLGQTAPNPVITTIRYFRDEYVAHIKDKRCPAKICPALIKYVVDPEKCRKCGLCARNCPVKCISGDRQTPYLINQEKCIKCGTCMQVCPFGAIGKV |
| NiFe hydrogenase subunit C | C | 156 | Acetomicrobium Mobile | MALSTVDVVEKVKEIVAPWKGKQGGLIPILQEVQRELGYLPEEALLTISRELKMPKAEVYGVATFYAQFHLKPRGRHVIRVCRGTACHVRGSLQILEKVKQMLGIEENETTDDLRFTLEPVACLGACGLAPVMMVDEDTHGRMTPDKIQAILDKYQ |
| NiFe hydrogenase subunit C | H | 156 | Acetomicrobium Mobile | MALSTVDVVEKVKEIVAPWKGKQGGLIPILQEVQRELGYLPEEALLTISRELKMPKAEVYGVATFYAQFHLKPRGRHVIRVCRGTACHVRGSLQILEKVKQMLGIEENETTDDLRFTLEPVACLGACGLAPVMMVDEDTHGRMTPDKIQAILDKYQ |
| NiFe hydrogenase large subunit | D | 475 | Acetomicrobium Mobile | MTEVFKLEINPVTRIEGHGKITVMLDESGHVRETRFHVTQYRGFEVFTHGRDFREMPVITPRICGICPVSHHLASAKACDEILGVTITPAAHKLRELMHMGQIVQSHALSFFHLSSPDILWGFDAPVKIRNVAGLVDRYPELAKKGIMLRKFGQEIIKTLGGKKIHPWHSIPGGVNRSLTPQERDAIAAQLPEMKSIAMEAIKLIKDYLQEGGEELKEFATLDTAYMGLVRDGYLELYDGEVRIKAPRGRILDQFDPKDYLDHIGEHVEPWSYLKFPFYKALGFPHGSYRVGPLARLNAADAVSTPEASKEFALYKEMGEDGIVPYTLYYHYARLIEALYGLERIEQLLADPDITSSDLRVTSKEINPEGIGVIEAPRGTLIHHYQVNESGVITKVNLIVATGHNNFAMNKGVEMVAKKYITGTNVPEGVFNRLEHVIRAYDPCLSCSTHAVGKMPLKLELVGPTGEILKEVTRD |
| NiFe hydrogenase large subunit | I | 475 | Acetomicrobium Mobile | MTEVFKLEINPVTRIEGHGKITVMLDESGHVRETRFHVTQYRGFEVFTHGRDFREMPVITPRICGICPVSHHLASAKACDEILGVTITPAAHKLRELMHMGQIVQSHALSFFHLSSPDILWGFDAPVKIRNVAGLVDRYPELAKKGIMLRKFGQEIIKTLGGKKIHPWHSIPGGVNRSLTPQERDAIAAQLPEMKSIAMEAIKLIKDYLQEGGEELKEFATLDTAYMGLVRDGYLELYDGEVRIKAPRGRILDQFDPKDYLDHIGEHVEPWSYLKFPFYKALGFPHGSYRVGPLARLNAADAVSTPEASKEFALYKEMGEDGIVPYTLYYHYARLIEALYGLERIEQLLADPDITSSDLRVTSKEINPEGIGVIEAPRGTLIHHYQVNESGVITKVNLIVATGHNNFAMNKGVEMVAKKYITGTNVPEGVFNRLEHVIRAYDPCLSCSTHAVGKMPLKLELVGPTGEILKEVTRD |
| NiFe hydrogenase small subunit | E | 179 | Acetomicrobium Mobile | MAKAKVATFWLEACAGCHMSFLDLDERLIDLFQNVEILFSPIVDAKDIPNIDVGVLSGGLGNVEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSEMMRYD |
| NiFe hydrogenase small subunit | J | 179 | Acetomicrobium Mobile | MAKAKVATFWLEACAGCHMSFLDLDERLIDLFQNVEILFSPIVDAKDIPNIDVGVLSGGLGNVEEVELAKKMRERCKYLVAWGDCAVFGGINCMRNFIPKDVVLREGYIETASTVNPQGIVPSEDIPELLPRALPIDYEVKVDVYVPGCPPDADTIYYVFKELLAGRVPKVPSEMMRYD |
Method: ELECTRON MICROSCOPY