Cryoem reconstruction of the hiv gp140 in complex with the extracellular domains of cd4 and the adnectin domain of combinectin. the gp140 and cd4 coordinates from entry 6edu were rigid body fitted to the em map along withe the crystal structure of cd4+adnectin
PDB DOI: 10.2210/pdb7t0o/pdb
Classification: ANTIVIRAL PROTEIN Organism(s): Hiv-1 06Tg.Ht008 , Homo Sapiens
Deposited: 2021-11-30 Deposition Author(s): Concha, N.O. , Wenzel, D.L. , William, S.P.
Method: ELECTRON MICROSCOPY Resolution: 8.7 Å
Cryoem reconstruction of the hiv gp140 in complex with the extracellular domains of cd4 and the adnectin domain of combinectin. the gp140 and cd4 coordinates from entry 6edu were rigid body fitted to the em map along withe the crystal structure of cd4+adnectin
Concha, N.O. , Wenzel, D.L. , William, S.P.
Primary Citation of Related Structures: 7T0O
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
BG505 SOSIP.664 gp140 | D | 650 | Hiv-1 06Tg.Ht008 , Homo Sapiens | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGSGSGGSGHHHHHHHH |
BG505 SOSIP.664 gp140 | G | 650 | Hiv-1 06Tg.Ht008 , Homo Sapiens | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGSGSGGSGHHHHHHHH |
BG505 SOSIP.664 gp140 | I | 650 | Hiv-1 06Tg.Ht008 , Homo Sapiens | AENLWVTVYYGVPVWKDAETTLFCASDAKAYETEKHNVWATHACVPTDPNPQEIHLENVTEEFNMWKNNMVEQMHTDIISLWDQSLKPCVKLTPLCVTLNCTNVTNNITDDMRGELKNCSFNMTTELRDKKQKVYSLFYRLDVVQINENQGNRSNNSNKEYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCKDKKFNGTGPCPSVSTVQCTHGIKPVVSTQLLLNGSLAEEEVMIRSENITNNAKNILVQFNTPVQINCTRPNNNTRKSIRIGPGQAFYATGDIIGDIRQAHCNVSKATWNETLGKVVKQLRKHFGNNTIIRFANSSGGDLEVTTHSFNCGGEFFYCNTSGLFNSTWISNTSVQGSNSTGSNDSITLPCRIKQIINMWQRIGQAMYAPPIQGVIRCVSNITGLILTRDGGSTNSTTETFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRCKRRVVGRRRRRRAVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALDGSGSGGSGHHHHHHHH |
BG505 SOSIP.664 gp140 | B | 39 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
BG505 SOSIP.664 gp140 | F | 38 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
BG505 SOSIP.664 gp140 | J | 38 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
T-cell surface glycoprotein CD4 | H | 370 | Hiv-1 06Tg.Ht008 , Homo Sapiens | KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVLPTHHHHHH |
T-cell surface glycoprotein CD4 | L | 370 | Hiv-1 06Tg.Ht008 , Homo Sapiens | KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVLPTHHHHHH |
T-cell surface glycoprotein CD4 | M | 370 | Hiv-1 06Tg.Ht008 , Homo Sapiens | KKVVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVLLESNIKVLPTHHHHHH |
Adnectin | O | 108 | Hiv-1 06Tg.Ht008 , Homo Sapiens | GVSDVPRDLEVVAATPTSLLISWDAPAVTVHSYHIQYWPLGSYQRYQVFSVPGSKSTATISGLKPGVEYQIRVYAETGGADSDQSMGWIQIGYRTEGDKPSQHHHHHH |
Adnectin | P | 108 | Hiv-1 06Tg.Ht008 , Homo Sapiens | GVSDVPRDLEVVAATPTSLLISWDAPAVTVHSYHIQYWPLGSYQRYQVFSVPGSKSTATISGLKPGVEYQIRVYAETGGADSDQSMGWIQIGYRTEGDKPSQHHHHHH |
Adnectin | Q | 108 | Hiv-1 06Tg.Ht008 , Homo Sapiens | GVSDVPRDLEVVAATPTSLLISWDAPAVTVHSYHIQYWPLGSYQRYQVFSVPGSKSTATISGLKPGVEYQIRVYAETGGADSDQSMGWIQIGYRTEGDKPSQHHHHHH |
BG505 SOSIP.664 gp140 | K | 35 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
BG505 SOSIP.664 gp140 | N | 35 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
BG505 SOSIP.664 gp140 | R | 35 | Hiv-1 06Tg.Ht008 , Homo Sapiens | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-11-30 Deposition Author(s): Concha, N.O. , Wenzel, D.L. , William, S.P.