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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7SZ4

Kinetically trapped pseudomonas-phage pap3 portal protein - delta barrel mutant class-2

PDB DOI: 10.2210/pdb7sz4/pdb

Classification: VIRAL PROTEIN
Organism(s): Pseudomonas Virus Pap3

Deposited: 2021-11-25
Deposition Author(s): Cingolani, G. , Hou, C.-F.D. , Li, F. , Lokareddy, R.K. , Swanson, N.A. , Yang, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.8 Å

7sz4
Literature

Kinetically trapped pseudomonas-phage pap3 portal protein - delta barrel mutant class-2

Cingolani, G. , Hou, C.-F.D. , Li, F. , Lokareddy, R.K. , Swanson, N.A. , Yang, R.

Primary Citation of Related Structures: 7SZ4


Proteins
Molecule Chains Sequence Length Organism Sequence
Portal protein K 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein J 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein I 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein H 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein L 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein A 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein B 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein C 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein D 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein E 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein F 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Portal protein G 705 Pseudomonas Virus Pap3 MAKRRKIKPMDDEQVLRHLDQLVNDALDFNSSELSKQRSEALKYYFGEPFGNERPGKSGIVSRDVQETVDWIMPSLMKVFTSGGQVVKYEPDTAEDVEQAEQETEYVNYLFMRKNEGFKVMFDWFQDTLMMKTGVVKVYVEEVLKPTFERFSGLSEDMVADILSDPDTSILAQSVDDDGTYTIKIRKDKKKREIKVLCVKPENFLVDRLATCIDDARFLCHREKYTVSDLRLLGVPEDVIEELPYDEYEFSDSQPERLVRDNFDMTGQLQYNSGDDAEANREVWASECYTLLDVDGDGISELRRILYVGDYIISNEPWDCRPFADLNAYRIAHKFHGMSVYDKIRDIQEIRSVLMRNIMDNIYRTNQGRSVVLDGQVNLEDLLTNEAAGIVRVKSMNSITPLETPQLSGEVYGMLDRLEADRGKRTGITDRTRGLDQNTLHSNQAAMSVNQLMTAAEQQIDLIARMFAETGVKRLFQLLHDHAIKYQNQEEVFQLRGKWVAVNPANWRERSDLTVTVGIGNMNKDQQMLHLMRIWEMAQAVVGGGGLGVLVSEQNLYNILKEVTENAGYKDPDRFWTNPNSPEALQAKAIREQKEAQPKPEDIKAQADAQRAQSDALAKQAEAQMKQVEAQIRLAEIELKKQEAVLQQREMALKEAELQLERDRFTWERARNEAEYHLEATQARAAYIGDGKVPETKKPTKAVRR
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-11-25
Deposition Author(s): Cingolani, G. , Hou, C.-F.D. , Li, F. , Lokareddy, R.K. , Swanson, N.A. , Yang, R.