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7SSA

Cryo-em structure of pioneer factor cbf1 bound to the nucleosome

PDB DOI: 10.2210/pdb7ssa/pdb

Classification: GENE REGULATION
Organism(s): Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis

Deposited: 2021-11-10
Deposition Author(s): Eek, P. , Tan, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

7ssa
Literature

Cryo-em structure of pioneer factor cbf1 bound to the nucleosome

Eek, P. , Tan, S.

Primary Citation of Related Structures: 7SSA


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.2 A 135 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.2 E 135 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A.1 C 131 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis SGGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATKASQEL
Histone H2A.1 G 131 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis SGGKGGKAGSAAKASQSRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKSAKATKASQEL
Histone H2B.1 D 130 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis SAKAEKKPASKAPAEKKPAAKKTSTSTDGKKRSKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA
Histone H2B.1 H 130 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis SAKAEKKPASKAPAEKKPAAKKTSTSTDGKKRSKARKETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQA
Centromere-binding protein 1 K 352 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis GSNSLANNNKLSTEDEEIHSARKRGYNEEQNYSEARKKQRDQGLLSQESNDGNIDSALLSEGATLKGTQSQYESGLTSNKDEKGSDDEDASVAEAAVAATVNYTDLIQGQEDSSDAHTSNQTNANGEHKDSLNGERAITPSNEGVKPNTSLEGMTSSPMESTQQSKNDMLIPLAEHDRGPEHQQDDEDNDDADIDLKKDISMQPGRRGRKPTTLATTDEWKKQRKDSHKEVERRRRENINTAINVLSDLLPVRESSKAAILACAAEYIQKLKETDEANIEKWTLQKLLSEQNASQLASANEKLQEELGNAYKEIEYMKRVLRKEGIEYEDMHTHKKQENERKSTRSDNPHEA
Centromere-binding protein 1 L 352 Saccharomyces Cerevisiae (Strain Atcc 204508 / S288C) , Synthetic Construct , Xenopus Laevis GSNSLANNNKLSTEDEEIHSARKRGYNEEQNYSEARKKQRDQGLLSQESNDGNIDSALLSEGATLKGTQSQYESGLTSNKDEKGSDDEDASVAEAAVAATVNYTDLIQGQEDSSDAHTSNQTNANGEHKDSLNGERAITPSNEGVKPNTSLEGMTSSPMESTQQSKNDMLIPLAEHDRGPEHQQDDEDNDDADIDLKKDISMQPGRRGRKPTTLATTDEWKKQRKDSHKEVERRRRENINTAINVLSDLLPVRESSKAAILACAAEYIQKLKETDEANIEKWTLQKLLSEQNASQLASANEKLQEELGNAYKEIEYMKRVLRKEGIEYEDMHTHKKQENERKSTRSDNPHEA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (137-MER) i 149 NA ATCGGAGAGGTCACGTGACCAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGGACGTCTCAGATATATACATCCTGAT
DNA (137-MER) j 149 NA ATCAGGATGTATATATCTGAGACGTCCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTGGTCACGTGACCTCTCCGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-11-10
Deposition Author(s): Eek, P. , Tan, S.