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7S01

X-ray structure of the phage ar9 non-virion rna polymerase holoenzyme in complex with a forked oligonucleotide containing the p077 promoter

PDB DOI: 10.2210/pdb7s01/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Bacillus Phage Ar9 , Synthetic Construct

Deposited: 2021-08-28
Deposition Author(s): Fraser, A. , Gordeeva, J. , Leiman, P.G. , Severinov, K.V. , Sokolova, M.L.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.4 Å

7s01
Literature

X-ray structure of the phage ar9 non-virion rna polymerase holoenzyme in complex with a forked oligonucleotide containing the p077 promoter

Fraser, A. , Gordeeva, J. , Leiman, P.G. , Severinov, K.V. , Sokolova, M.L.

Primary Citation of Related Structures: 7S01


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit A 464 Bacillus Phage Ar9 , Synthetic Construct MDILENYVSFDEQARDINIAFDKLFGRDDISHMNNFSINKRSYYNCLDQISDDLNLVLNKYNDLAYSLLEIRYNMATKENYTHMEFYSDIERLFIKNEKLLNVISDIVEEEYDLDLNQASKGKKINIELQVTDNLNKIYLKSSVLMRILIPILCDFNCDDDINEVLVYDIFKEVIKSFDDGKKNALNKLYKIIYSRVFETKYSDVVIWTYLKNMSTDLMIIVKDYFKVIIKKIFPKLKHNSSVISYLDVVIKQKLKYLFTFKYPISYKPLKAETTDDEELSEQERMEINLLRNDQGNSIINECSIKQEIAKIKKKYNVTDEVMKEFINGRELNSIQIYLVKIYYSNKFKVNSNKNDIFYLLYGMTRELGEMNFSIIPEILSCAIAPNVRKMNNRKKLVDKIIHSDKYSYLLKSYLPIKNILDKNNVILQLMTIKNAKFMNKENKEVDFSTDHLAEEVLDMLLCI
DNA-directed RNA polymerase D 631 Bacillus Phage Ar9 , Synthetic Construct MEKTYNLNDILLSNEYEKIKEDIKEEIINDMASKKVKYSNTSEFAKNDFLKDEFIDLVVDGETYEITYGNLITLLIVARPFNHFKVPMTEDLLFDLSDLKEYQNYYTTLLEHFGYSNEIKSIIKDVISELAIFSGDINVTFGNTVSIKSLIDLGNKVKRFRELLHYRLPNDEALEFNDIEAIIKKNLDEIMKILSETDNMLRYYIDSGAGINSKQFGQVLSLVGSKPDLFGKIIPYPINTSFLRGLDVRSFYINALGARKALITNYQQVRNSGYLTRKISMLLMDTKLIDLDDCGSHENNYLSINVENKDVLKRFSKRSYLNNNGELVEIDINDESLIGQVIKIPSPTTCASNEGVCRKCYGKLFDINKDLNIGMIAVLLLTDPLTQRLLSAKHLLETRSSKIDWGTNFEENFIVNRNLIYPKVYNGTVIIKEDDFKEDEETEEQVFDTFTLKSGNRFISISSPMRLFLNKDLKKQLDESFYNIEEMQFEIPLNKLDEGDSFATFIMDNNELSKPLREIKDLIETNKYIKDHNVNEVVNYFIYLLNESGINIQSVHSELIIREMMKLDDSDRTQFKNDKMPDYEIFRITDANLKGDSLSRSLLFEQVKKQLTTLDYDTFNKTKSSILDKLL
DNA-directed RNA polymerase C 665 Bacillus Phage Ar9 , Synthetic Construct MDDISVIKNEDYEGSHRFLAEELLMPNANKTDGNRSTMFCSHLAQAVTLQKAEPPLVYTNFENQVGKYSTAGYRKANSNYKVIEKIYKNDYNYVLIVQDQETGEYTLFERAECEFLTEHYGFQWDNDKIDSLKKDDTIEKDTVLYKNTCYDENMNFGYGVNLNAAYFSYKNETLEDAIVISESAAKKLGTFSVNKVKVSVNTNDILLNLYGDNENYKGFPDIGEHIKNQIIASRRRFDYNTALYELKNLNEMRDSDTPFFADGKIVDIEIFSNVPEEELKVQKYNEQVLYYINKQKEFSNNVYQKLKKIVEGKDNNVSDKLLHFYNNCKMRIDENISYTYQNSKFSGFIMEFTILEEEPLNKGSKITGRYGNKGVISKILPDDQMPTVAEGRFKGLKADICLNPLGVFNRLNPSQLIEQELNWIAKFIRKDMEEAGSNEEKVSILLDFLNRVNKEETELMEEFINSLNKTELEEFLNDIIENGIPICQKPFFGNIGLDELWELYNHYDHIDYFKCEGISTPLIIGEIYMVRLKHEPHSKFSARSTSFMNLRGLPAKSKNFKEHKDLYSKTPVRIGNMEISNLSLTNEMGSIMDMLNSYSNNETNRRELIMQLLTGNPFDTNIDLSDVESGTSKILKSLFTCLGLSIDDVEEEWENKLNGKVEDEK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Template strand of the forked DNA oligonucleotide (downstream copy) containing the P077 AR9 promoter motif n 32 NA CTCCAATATGTGATATAATATAUUGUUUATTG
Template strand of the forked DNA oligonucleotide (downstream copy) containing the P077 AR9 promoter motif t 32 NA CTCCAATATGTGATATAATATAUUGUUUATTG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-08-28
Deposition Author(s): Fraser, A. , Gordeeva, J. , Leiman, P.G. , Severinov, K.V. , Sokolova, M.L.