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FASTA Sequence PDB Format mmCIF Format
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7RPO

Archaeal dna ligase and heterotrimeric pcna in complex with non-ligatable dna

PDB DOI: 10.2210/pdb7rpo/pdb

Classification: LIGASE/DNA
Organism(s): Saccharolobus Solfataricus , Synthetic Construct

Deposited: 2021-08-03
Deposition Author(s): Pascal, J.M. , Sverzhinsky, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.16 Å

7rpo
Literature

Archaeal dna ligase and heterotrimeric pcna in complex with non-ligatable dna

Pascal, J.M. , Sverzhinsky, A.

Primary Citation of Related Structures: 7RPO


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase sliding clamp 1 A 258 Saccharolobus Solfataricus , Synthetic Construct MAFKIVYPNAKDFFSFINSITNVTDSIILNFTEDGIFSRHLTEDKVLMAIMRIPKDVLSEYSIDSPTSVKLDVSSVKKILSKASSKKATIELTETDSGLKIIIRDEKSGAKSTIYIKAEKGQVEQLTEPKVNLAVNFTTDESVLNVIAADVTLVGEEMRISTEEDKIKIEAGEEGKRYVAFLMKDKPLKELSIDTSASSSYSAEMFKDAVKGLRGFSAPTMVSFGENLPMKIDVEAVSGGHMIFWIAPRLLEHHHHHH
DNA polymerase sliding clamp 2 B 245 Saccharolobus Solfataricus , Synthetic Construct MKAKVIDAVSFSYILRTVGDFLSEANFIVTKEGIRVSGIDPSRVVFLDIFLPSSYFEGFEVSQEKEIIGFKLEDVNDILKRVLKDDTLILSSNESKLTLTFDGEFTRSFELPLIQVESTQPPSVNLEFPFKAQLLTITFADIIDELSDLGEVLNIHSKENKLYFEVIGDLSTAKVELSTDNGTLLEASGADVSSSYGMEYVANTTKMRRASDSMELYFGSQIPLKLRFKLPQEGYGDFYIAPRAD
DNA polymerase sliding clamp 3 C 252 Saccharolobus Solfataricus , Synthetic Construct MKVVYDDVRVLKDIIQALARLVDEAVLKFKQDSVELVALDRAHISLISVNLPREMFKEYDVNDEFKFGFNTQYLMKILKVAKRKEAIEIASESPDSVIINIIGSTNREFNVRNLEVSEQEIPEINLQFDISATISSDGFKSAISEVSTVTDNVVVEGHEDRILIKAEGESEVEVEFSKDTGGLQDLEFSKESKNSYSAEYLDDVLSLTKLSDYVKISFGNQKPLQLFFNMEGGGKVTYLLAPKVLEHHHHHH
DNA ligase E 621 Saccharolobus Solfataricus , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMEFKVIAEYFDKLEKISSRLQLTALLADLLSKSDKTIIDKVVYIIQGKLWPDFLGYPELGIGEKFLIKAISIATNTDENSVENLYKTIGDLGEVARRLKSKQQSTGILGFLGTTSKESLTVDEVYSTLSKVALTTGEGSRDLKIRLLAGLLKKADPLEAKFLVRFVEGRLRVGIGDATVLDAMAIAFGGGQSASEIIERAYNLRADLGNIAKIIVEKGIEALKTLKPQVGIPIRPMLAERLSNPEEILKKMGGNAIVDYKYDGERAQIHKKEDKIFIFSRRLENITSQYPDVVDYVSKYIEGKEFIIEGEIVAIDPESGEMRPFQELMHRKRKSDIYEAIKEYPVNVFLFDLMYYEDVDYTTKPLEARRKLLESIVKPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLMEIKRDVKHPRVNSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQPKKKIESPAVDESV

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Upstream strand DNA x 24 NA GTATCCTCGTAGTGCAGATGCGTC
Downstream strand DNA y 23 NA GTCGGACTGATTCGGTAGATCTG
Template strand DNA z 47 NA CAGATCTACCGAATCAGTCCGACGACGCATCTGCACTACGAGGATAC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-08-03
Deposition Author(s): Pascal, J.M. , Sverzhinsky, A.