7RAM
Cryo-em structure of the hcmv ghglgo trimer derived from ad169 and tr strains in complex with pdgfralpha
PDB DOI: 10.2210/pdb7ram/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Human Betaherpesvirus 5 , Human Herpesvirus 5 Strain Ad169
Deposited: 2021-07-02 Deposition Author(s): Chen, D. , Jardetzky, T.S. , Johnson, D.C. , Liu, J. , Vanarsdall, A.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.43 Å
Cryo-em structure of the hcmv ghglgo trimer derived from ad169 and tr strains in complex with pdgfralpha
Chen, D. , Jardetzky, T.S. , Johnson, D.C. , Liu, J. , Vanarsdall, A.L.
Primary Citation of Related Structures: 7RAM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Envelope glycoprotein H | A | 706 | Homo Sapiens , Human Betaherpesvirus 5 , Human Herpesvirus 5 Strain Ad169 | LLLNTYGRPIRFLRENTTQCTYNSSLRNSTVVRENAISFNFFQSYNQYYVFHMPRCLFAGPLAEQFLNQVDLTETLERYQQRLNTYALVSKDLASYRSFSQQLKAQDSLGQQPTTVPPPIDLSIPHVWMPPQTTPHDWKGSHTTSGLHRPHFNQTCILFDGHDLLFSTVTPCLHQGFYLMDELRYVKITLTEDFFVVTVSIDDDTPMLLIFGHLPRVLFKAPYQRDNFILRQTEKHELLVLVKKAQLNRHSYLKDSDFLDAALDFNYLDLSALLRNSFHRYAVDVLKSGRCQMLDRRTVEMAFAYALALFAAARQEEAGTEISIPRALDRQAALLQIQEFMITCLSQTPPRTTLLLYPTAVDLAKRALWTPDQITDITSLVRLVYILSKQNQQHLIPQWALRQIADFALQLHKTHLASFLSAFARQELYLMGSLVHSMLVHTTERREIFIVETGLCSLAELSHFTQLLAHPHHEYLSDLYTPCSSSGRRDHSLERLTRLFPDATVPATVPAALSILSTMQPSTLETFPDLFCLPLGESFSALTVSEHVSYVVTNQYLIKGISYPVSTTVVGQSLIITQTDSQTKCELTRNMHTTHSITAALNISLENCAFCQSALLEYDDTQGVINIMYMHDSDDVLFALDPYNEVVVSSPRTHYLMLLKNGTVLEVTDVVVDATDSRGSLVPRGSSAWSHPQFEKAGHHHHHHHH |
| Envelope glycoprotein L | B | 242 | Homo Sapiens , Human Betaherpesvirus 5 , Human Herpesvirus 5 Strain Ad169 | PTAAEKVPAECPELTRRCLLGEVFQGDKYESWLRPLVNVTRRDGPLSQLIRYRPVTPEAANSVLLDDAFLDTLALLYNNPDQLRALLTLLSSDTAPRWMTVMRGYSECGDGSPAVYTCVDDLCRGYDLTRLSYGRSIFTEHVLGFELVPPSLFNVVVAIRNEATRTNRAVRLPVSTAAAPEGITLFYGLYNAVKEFCLRHQLDPPLLRHLDKYYAGLPPELKQTRVNLPAHSRYGPQAVDAR |
| Envelope glycoprotein O | C | 463 | Homo Sapiens , Human Betaherpesvirus 5 , Human Herpesvirus 5 Strain Ad169 | MGRKGEMRGVFNLFFLMSLTFLLFSFINCRAAVRLSVGRYWSGKVLSTIGKQRLDKFKLEILKQLEKDIYTKYFNMTRQHIKNLTMNMTEFPRYYILAGPIQNNSVTYLWFDFYSTQLRKPAKYVFSEYNHTAKTITFRPPSCGTVPSMTCLSEMLNVSKRNDTGEQGCGNFTTFNPMFFNVPRWNTKLYVGSKKVNVDSQTIYFLGLTALLLRYAQRNCTHSFYLVNAMSRNLFRVPKYINGTKLKNTMRKLKRKQAPVKEQSEKKSKKSQSTTTPYSPYTTSTALNVTTNATYSVTTTARRVSTSTIAYRPDSSFMKSIMTTQLRDLATWVYTTLRYRQNPFCESSRNRTAVSEFMKNTHVLIRNETPYTIYGTLDMSSLYYNETMFVENKTASETTPTSPSTGFQRTFIDPLWDYLDSLLFLDEIRNFSLQSPTYGNLTPPEHRRAVNLSTLNSLWWWLQ |
| Platelet-derived growth factor receptor alpha | D | 530 | Homo Sapiens , Human Betaherpesvirus 5 , Human Herpesvirus 5 Strain Ad169 | MGTSHPAFLVLGCLLTGLSLILCQLSLPSILPNENEKVVQLNSSFSLRCFGESEVSWQYPMSEEESSDVEIRNEENNSGLFVTVLEVSSASAAHTGLYTCYYNHTQTEENELEGRHIYIYVPDPDVAFVPLGMTDYLVIVEDDDSAIIPCRTTDPETPVTLHNSEGVVPASYDSRQGFNGTFTVGPYICEATVKGKKFQTIPFNVYALKATSELDLEMEALKTVYKSGETIVVTCAVFNNEVVDLQWTYPGEVKGKGITMLEEIKVPSIKLVYTLTVPEATVKDSGDYECAARQATREVKEMKKVTISVHEKGFIEIKPTFSQLEAVNLHEVKHFVVEVRAYPPPRISWLKNNLTLIENLTEITTDVEKIQEIRYRSKLKLIRAKEEDSGHYTIVAQNEDAVKSYTFELLTQVPSSILDLVDDHHGSTGGQTVRCTAEGTPLPDIEWMICKDIKKCNNETSWTILANNVSNIITEIHPRDRSTVEGRVTFAKVEETIAVRCLAKNLLGAENRELKLVAPTLRSEENLYFQ |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-07-02 Deposition Author(s): Chen, D. , Jardetzky, T.S. , Johnson, D.C. , Liu, J. , Vanarsdall, A.L.