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FASTA Sequence PDB Format mmCIF Format
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7R51

Structure of p. gingivalis dpp11 in complex with the dipeptide arg-asp

PDB DOI: 10.2210/pdb7r51/pdb

Classification: HYDROLASE
Organism(s): Porphyromonas Gingivalis , Synthetic Construct

Deposited: 2022-02-09
Deposition Author(s): Bezerra, G.A. , Bountra, C. , Coker, J.A. , Foster, W.R. , Nemoto, T.K. , Ohara-Nemoto, Y. , Tham, C.T. , Yue, W.W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.808 Å

7r51
Literature

Structure of p. gingivalis dpp11 in complex with the dipeptide arg-asp

Bezerra, G.A. , Bountra, C. , Coker, J.A. , Foster, W.R. , Nemoto, T.K. , Ohara-Nemoto, Y. , Tham, C.T. , Yue, W.W.

Primary Citation of Related Structures: 7R51


Proteins
Molecule Chains Sequence Length Organism Sequence
Asp/Glu-specific dipeptidyl-peptidase A 707 Porphyromonas Gingivalis , Synthetic Construct MDEGMWLMQQLGRKYAQMKERGLKMKEYDLYNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHNYLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDYLSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVRLVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVPLKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRIRMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGLRQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEGIIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSAEVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSVFGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPILRAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTTLDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHTTGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVLLVIDKVGGCQRLLDEMNIVPAHHHHHH
Asp/Glu-specific dipeptidyl-peptidase B 707 Porphyromonas Gingivalis , Synthetic Construct MDEGMWLMQQLGRKYAQMKERGLKMKEYDLYNPNGTSLKDAVVLFDGGCTGEVVSDRGLVLTNHHCGYDMIQAHSTLEHNYLENGFWAMREADELPNKDISVVFIDKIEDVTDYVKKELKAIKDPNSMDYLSPKYLQKLADKKAGKNFSAKNPGLSVEIKAFYGGNLYLMFTKKTYTDVRLVGAPPSSIGKFGADTDNWIWPRHTGDFSIFRIYADKNGNPAPYSEDNVPLKPKRFFNISLGGVQENDYAMIMGFPGTTHRYFTASEVDEWKSIDNDIRIRMRDIRQGVMLREMLADPQIKIMYSAKYAASQNAYKRAIGANWAIKTRGLRQNKQAMQDRLIAWGAKQGTPRYEEAVHEIDATVAKRADLRRRYWMIEEGIIRGIEFARSPIPTEDETKALQGNDASARKEAIDKIRTRYSKFANKDYSAEVDKKVAVAMLTEYLKEIPYENLPLHLRLVKDRFAGDVQAYVDDIFARSVFGSEAQFDAFAAVPSVEKLAEDPMVLFASSVFDEYRKLYNELRPYDDPILRAQRTYIAGLLEMDGDQDQFPDANLTLRFTYGQVKGYSPRDNVYYGHQTTLDGVMEKEDPDNWEFVVDPKLKAVYERKDFGRYADRSGRMPVAFCATTHTTGGNSGSPVMNANGELIGLNFDRNWEGVGGDIQYLADYQRSIIVDIRYVLLVIDKVGGCQRLLDEMNIVPAHHHHHH
ARG-ASP C 2 Porphyromonas Gingivalis , Synthetic Construct RD
ARG-ASP D 2 Porphyromonas Gingivalis , Synthetic Construct RD
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-02-09
Deposition Author(s): Bezerra, G.A. , Bountra, C. , Coker, J.A. , Foster, W.R. , Nemoto, T.K. , Ohara-Nemoto, Y. , Tham, C.T. , Yue, W.W.