7QOJ
Tail barrel assembly of the phicrass001 virion with c12 symmetry imposed
PDB DOI: 10.2210/pdb7qoj/pdb
Classification: VIRUS Organism(s): Bacteroides Phage Crass001
Deposited: 2021-12-24 Deposition Author(s): Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.21 Å
Tail barrel assembly of the phicrass001 virion with c12 symmetry imposed
Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.
Primary Citation of Related Structures: 7QOJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Portal protein gp20 | A | 806 | Bacteroides Phage Crass001 | MADFLNFPRQMLPFSKKTKQWRKDCLLWANQKTFFNYSLVRKSVIHKKINYDLLNGRLHMSDLELVLNPDGIKAAYIPDRLQHYPIMNSKLNVLRGEESKRVFDFKVVVTNPNAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEWQDIREVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPVIERVNPLKIRIFKSGYSNKVEDADMIILEDYWSPGRVIDTYYDVLSPKDIKYIETMPDYIGQGAVDQMDNIDERYGFVNQNMIGDEITVRDGTYFFDPANLFTEGIANSLLPYDLAGNLRVLRLYWKSKRKILKVKSYDPETGEEEWNFYPENYVVNKEAGEEVQSFWVNEAWEGTMIGNEIFVNMRPRLIQYNRLNNPSRCHFGIVGSIYNLNDSRPFSLVDMMKPYNYLYDAIHDRLNKAIASNWGSILELDLSKVPKGWDVGKWMYYARVNHIAVIDSFKEGTIGASTGKLAGALNNAGKGMIETNIGNYIQQQINLLEFIKMEMADVAGISKQREGQISQRETVGGVERATLQSSHITEWLFTIHDDVKKRALECFLETAKVALKGRNKKFQYILSDTSTRVMEIDGDEFAEADYGLVVDNSNGTQELQQKLDTLAQAALQTQTLSFSTITKLYTSSSLAEKQRLIEKDEKQIRERQAQAQKEQLEAQQQIAAMQQQQKEAELLQKEEANIRDNQTKIIIAQIQSEGGPDEEDGIMIDDYSPEAKANLAEKIREFDEKLKLDKDKLKLDKKKAETDASIKRQALRKKSSTTNK |
| Ring protein 1 gp43 | B | 236 | Bacteroides Phage Crass001 | MVNNINWVKLPVILDRLLRHPLLTDLNLETAIQYTLDFISAMGLPNVYVDKIETIDIKEYRGELPCDLISINQVRLHKNGIALRAMTDNFNAYPTHDHKEGDWYERGEPSFKTQGRVIFTSIKHEKVDISYKAIMLDDEGLPLIPDNPIFLKTLELYIKKEWFTILFDMGKISPAVLNNTQQEYAFKAGQCNNEFVIPSVSEMEAITNMWNQLIPRVTEFRRGFKNLGDKEYIRVH |
| Ring protein 2 gp40 | C | 225 | Bacteroides Phage Crass001 | MTYNELIYMVLDELKLSSDDSYYTPDHVIFLLVKYRSFLLKQRYSDIKKQIPDSDYQSICLDLIEVPAISGEPCEGSSYLRSKNKVPTTMMIGNPRVYPMDFYQGEITYISRDRMRYVGYNKFLRNIIYCSKAPDGYLYFKSWNPQFLHLEKVSFNAIFEDAKEASEMACPEENGTICKLEDKEFPIEDALVPPLIELVVKELRGPEYSPKDEDNNAKDDLPDAR |
| Ring protein 3 gp35 | D | 230 | Bacteroides Phage Crass001 | MTNKEFSDGFSTLLNSFGITPNITLDEYEKSTFLTNAQEQLIIDIYSGRNIIYGKSFEQTEEIRRYLSNLVETYETSTKVTGKLGLSKDSVFFEIPQDTWFITYEVAFLKDSRLGCLDGIEASVVPLPQDDLYRAKDNPFRGPSKDRVLRLDIKSDLAELISKYNVDKYLMRYISQPTPIILVDLPDGLSINGVSTESECELNPVVHRAILERAVQLAIISKTQLTGNKE |
| Ring protein 4/5 gp34 | E | 238 | Bacteroides Phage Crass001 | MNVNEFSNEFDVLYNNIMSNAAPGLNEYEKSVLLTKAQEEIVKNYFEPAGNKYGKGLDDSPKRQIDFSELIKVGEGVLNTSAPTITFDKRAKVYDLPADLFLVINEAVDTNAGTKQIVPISYSDYTRLMSRPYKEPVKYQAWRIITTSINNISVELIVNSNETITDYKVRYIRRPAPIITTNLSSEYGDVTINGVSTVSECELNPIIHSEILQRAVELAKAAYQGDLQASVELGQRSE |
| Ring protein 4/5 gp34 | F | 238 | Bacteroides Phage Crass001 | MNVNEFSNEFDVLYNNIMSNAAPGLNEYEKSVLLTKAQEEIVKNYFEPAGNKYGKGLDDSPKRQIDFSELIKVGEGVLNTSAPTITFDKRAKVYDLPADLFLVINEAVDTNAGTKQIVPISYSDYTRLMSRPYKEPVKYQAWRIITTSINNISVELIVNSNETITDYKVRYIRRPAPIITTNLSSEYGDVTINGVSTVSECELNPIIHSEILQRAVELAKAAYQGDLQASVELGQRSE |
| Tail hub protein A gp38 | G | 215 | Bacteroides Phage Crass001 | MHFNELRISQDNRFLIIDVSVDNQDYFEDVLLDSIVIDTQDTFVMNGPSDNPLYIYNVEDAYDLTYSLPEQCNCNPVRVEEDESYCFTYGTQQMKNVRLELNIQDLKVSPCSTMFFVYVKSKGTPSTDTPCGFDKDQILGTVINLQPIYKQTLKYLKEVECDCNIPKGFIDMILKLKAIELCVRTGNYPQAIKYWNKFFIKNNCKSPTSNCGCYG |
| Tail hub protein A gp38 | H | 215 | Bacteroides Phage Crass001 | MHFNELRISQDNRFLIIDVSVDNQDYFEDVLLDSIVIDTQDTFVMNGPSDNPLYIYNVEDAYDLTYSLPEQCNCNPVRVEEDESYCFTYGTQQMKNVRLELNIQDLKVSPCSTMFFVYVKSKGTPSTDTPCGFDKDQILGTVINLQPIYKQTLKYLKEVECDCNIPKGFIDMILKLKAIELCVRTGNYPQAIKYWNKFFIKNNCKSPTSNCGCYG |
| Tail hub protein B gp39 | I | 114 | Bacteroides Phage Crass001 | MDKMLEISEEAITRYFTTLSQFGYKKYSDVDKIIVLFFMEEMLAGEMSYYVTQDDYRNIVNALYCLAGSTCMIDFPMFESYDTLVHSNNRTFVPRITEDSILRSTEDDNFRVEA |
| Tail fiber protein gp22 | J | 832 | Bacteroides Phage Crass001 | MFFTQEDYRKIEKWLLANSRKDTDFAGAATPLKGNETVVLVQNGKNVKASVKDVVEQLFLLGVSDFVNITDKYGESYISLSQAIELIPYRSRKIGQVVTFLDDTGKWAMFQFQGTRKNQWGTLSLWVDLIDLMTGLTITDSEDIVTETNSANQVALKFADKTYNEADYSGLGRVYLRKNIVNVEDPVTGNIVKMNYLTQSMISKENTIYIVQYSYNLNGQTITIPSGCVLKFEGGSISNGSIKGTDTNIIAPQIRIFNTILLSGTWKVRDIFDDWFDFNATTNFDNINNFYNISILQSDDLENNVILKGNYYSSLKDGIVLSLSSNTNLVLNGSISLLPNNLSSYSIIKGVDKENIKISGGGRLIGDLQNHLGDTGEWGFGISFTGCKTVSITNIDSSYMWGDGLYIGASDDTKEETLSQNIQVNNCKFEYNRRQGISITGAVDVFVNNCYFFNTGKINGTSPKAGLDIEPSGLYNSNVTISNCIADSNVSTGFLVYGDNRNIVIDNCASKNQLISITIAQRSATTDNDDVFIRHGNIGGSLQITRGNIRVEDCEVDSVYFTADTSGIGANVTISNSVIGAKRWEGSTYFNSVFLIDSNSQINNLYIFDSKIDYDPSILTQGLFNIGGNSIRDNILFENCDISQKNTVNSLNTKVGSYRNCRFYNMTRIYLANEPNKTVEFTDNYCAMTRESSSTNIFSFLNSSSTQDVILFVVRNNTFSTKGSINVGSIGLIDVTGVNLGNKMIFENNHFLTQYPLTQEQIIKALSNRITVDTNYNFTSRFPYRATLESLPAYNTFDAGALIYGDDNLLYFWNGTNLTNSEGTDARKVVIV |
| Tail fiber protein gp22 | K | 832 | Bacteroides Phage Crass001 | MFFTQEDYRKIEKWLLANSRKDTDFAGAATPLKGNETVVLVQNGKNVKASVKDVVEQLFLLGVSDFVNITDKYGESYISLSQAIELIPYRSRKIGQVVTFLDDTGKWAMFQFQGTRKNQWGTLSLWVDLIDLMTGLTITDSEDIVTETNSANQVALKFADKTYNEADYSGLGRVYLRKNIVNVEDPVTGNIVKMNYLTQSMISKENTIYIVQYSYNLNGQTITIPSGCVLKFEGGSISNGSIKGTDTNIIAPQIRIFNTILLSGTWKVRDIFDDWFDFNATTNFDNINNFYNISILQSDDLENNVILKGNYYSSLKDGIVLSLSSNTNLVLNGSISLLPNNLSSYSIIKGVDKENIKISGGGRLIGDLQNHLGDTGEWGFGISFTGCKTVSITNIDSSYMWGDGLYIGASDDTKEETLSQNIQVNNCKFEYNRRQGISITGAVDVFVNNCYFFNTGKINGTSPKAGLDIEPSGLYNSNVTISNCIADSNVSTGFLVYGDNRNIVIDNCASKNQLISITIAQRSATTDNDDVFIRHGNIGGSLQITRGNIRVEDCEVDSVYFTADTSGIGANVTISNSVIGAKRWEGSTYFNSVFLIDSNSQINNLYIFDSKIDYDPSILTQGLFNIGGNSIRDNILFENCDISQKNTVNSLNTKVGSYRNCRFYNMTRIYLANEPNKTVEFTDNYCAMTRESSSTNIFSFLNSSSTQDVILFVVRNNTFSTKGSINVGSIGLIDVTGVNLGNKMIFENNHFLTQYPLTQEQIIKALSNRITVDTNYNFTSRFPYRATLESLPAYNTFDAGALIYGDDNLLYFWNGTNLTNSEGTDARKVVIV |
| Tail fiber protein gp22 | L | 832 | Bacteroides Phage Crass001 | MFFTQEDYRKIEKWLLANSRKDTDFAGAATPLKGNETVVLVQNGKNVKASVKDVVEQLFLLGVSDFVNITDKYGESYISLSQAIELIPYRSRKIGQVVTFLDDTGKWAMFQFQGTRKNQWGTLSLWVDLIDLMTGLTITDSEDIVTETNSANQVALKFADKTYNEADYSGLGRVYLRKNIVNVEDPVTGNIVKMNYLTQSMISKENTIYIVQYSYNLNGQTITIPSGCVLKFEGGSISNGSIKGTDTNIIAPQIRIFNTILLSGTWKVRDIFDDWFDFNATTNFDNINNFYNISILQSDDLENNVILKGNYYSSLKDGIVLSLSSNTNLVLNGSISLLPNNLSSYSIIKGVDKENIKISGGGRLIGDLQNHLGDTGEWGFGISFTGCKTVSITNIDSSYMWGDGLYIGASDDTKEETLSQNIQVNNCKFEYNRRQGISITGAVDVFVNNCYFFNTGKINGTSPKAGLDIEPSGLYNSNVTISNCIADSNVSTGFLVYGDNRNIVIDNCASKNQLISITIAQRSATTDNDDVFIRHGNIGGSLQITRGNIRVEDCEVDSVYFTADTSGIGANVTISNSVIGAKRWEGSTYFNSVFLIDSNSQINNLYIFDSKIDYDPSILTQGLFNIGGNSIRDNILFENCDISQKNTVNSLNTKVGSYRNCRFYNMTRIYLANEPNKTVEFTDNYCAMTRESSSTNIFSFLNSSSTQDVILFVVRNNTFSTKGSINVGSIGLIDVTGVNLGNKMIFENNHFLTQYPLTQEQIIKALSNRITVDTNYNFTSRFPYRATLESLPAYNTFDAGALIYGDDNLLYFWNGTNLTNSEGTDARKVVIV |
| Cargo protein 1 gp45 | M | 842 | Bacteroides Phage Crass001 | MAKKKIKRRGKMPPNIFDTGGQSWGQQSSGQFSNAFKGENLGNSIGSIGGAVGGIAQAGISNAQIADTSGIEAQNKAQKNMVVGASSNDDLMSEWGSWNKVKDDYSWKDVRGGSTGQRVTNTIGAAGQGAAAGASVGGPIGAIVGGVVGLGSAIGGWLGGNRKAKRKAKKLNKEAKEANERALTSFETRADNIDTQNDFNMLANFSAYGGPLEFGSGAIGYEFDNRYLNNQEMSAVAKQRLTSLPNSFQALPEMNTYNAFAEGGGLSREKNYGSKKKPYPSVPSGDFAGPHRSYPIPTKADARDALRLAGLHGNESVRRKVLAKYPSLKAFGGSLFDSVVGNNFNQSFTQGIQGMFQQEPEQTVQAANIAKDGGDIKIKEKNKGKFTAYCGGKVTEACIRKGKNSSNPTTRKRATFAQNARNWNAFGGWLNTQGGDFTNGVTFINEGGSHEENPYQGIQIGVDPEGAPNLVEQGEVVYDDYVFSDRMEIPDDIRKEYKLRGKTFAKAAKSAQRESEERPNDPLSTKGLQAAMERIATAQEEARQRKEAHREGNEYPSMFAYGGDTNPYGLALEDPMSVEELEALMVQSGETGEIAPEGNNGNRQTWTRYAPIIGSGLASLSDLFSKPDYDSADLISGVDLGAEAVGYAPIGNYLSYRPLDRDFYINKMNQQAAATRRGLMNTSGGNRLNAQAGILAADYNYGQNMGNLARQAEEYNQQLRERVEAFNRGTNMFNTETGLKASMFNAESRNAAKRARLGQATTVAQLRQGIKDQDAARRSANITNFLQGLGDMGWENEQANWLDTLAKSGVLKMNTKGEYTGGTKKAKGGKVRTKKKKGLTYG |
| Cargo protein 1 gp45 | N | 842 | Bacteroides Phage Crass001 | MAKKKIKRRGKMPPNIFDTGGQSWGQQSSGQFSNAFKGENLGNSIGSIGGAVGGIAQAGISNAQIADTSGIEAQNKAQKNMVVGASSNDDLMSEWGSWNKVKDDYSWKDVRGGSTGQRVTNTIGAAGQGAAAGASVGGPIGAIVGGVVGLGSAIGGWLGGNRKAKRKAKKLNKEAKEANERALTSFETRADNIDTQNDFNMLANFSAYGGPLEFGSGAIGYEFDNRYLNNQEMSAVAKQRLTSLPNSFQALPEMNTYNAFAEGGGLSREKNYGSKKKPYPSVPSGDFAGPHRSYPIPTKADARDALRLAGLHGNESVRRKVLAKYPSLKAFGGSLFDSVVGNNFNQSFTQGIQGMFQQEPEQTVQAANIAKDGGDIKIKEKNKGKFTAYCGGKVTEACIRKGKNSSNPTTRKRATFAQNARNWNAFGGWLNTQGGDFTNGVTFINEGGSHEENPYQGIQIGVDPEGAPNLVEQGEVVYDDYVFSDRMEIPDDIRKEYKLRGKTFAKAAKSAQRESEERPNDPLSTKGLQAAMERIATAQEEARQRKEAHREGNEYPSMFAYGGDTNPYGLALEDPMSVEELEALMVQSGETGEIAPEGNNGNRQTWTRYAPIIGSGLASLSDLFSKPDYDSADLISGVDLGAEAVGYAPIGNYLSYRPLDRDFYINKMNQQAAATRRGLMNTSGGNRLNAQAGILAADYNYGQNMGNLARQAEEYNQQLRERVEAFNRGTNMFNTETGLKASMFNAESRNAAKRARLGQATTVAQLRQGIKDQDAARRSANITNFLQGLGDMGWENEQANWLDTLAKSGVLKMNTKGEYTGGTKKAKGGKVRTKKKKGLTYG |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-12-24 Deposition Author(s): Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.