7QOH
Unique vertex of the phicrass001 virion with c5 symmetry imposed
PDB DOI: 10.2210/pdb7qoh/pdb
Classification: VIRUS Organism(s): Bacteroides Phage Crass001
Deposited: 2021-12-24 Deposition Author(s): Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.32 Å
Unique vertex of the phicrass001 virion with c5 symmetry imposed
Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.
Primary Citation of Related Structures: 7QOH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Auxiliary capsid protein gp36 | A | 333 | Bacteroides Phage Crass001 | MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAGIVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYILRLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTESTPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLGMMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFCMGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEKTITLVAVDDGSHTAMNALIGAINTASGLTIATL |
| Auxiliary capsid protein gp36 | B | 333 | Bacteroides Phage Crass001 | MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAGIVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYILRLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTESTPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLGMMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFCMGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEKTITLVAVDDGSHTAMNALIGAINTASGLTIATL |
| Major capsid protein gp32 | C | 504 | Bacteroides Phage Crass001 | MAGKLGKFQMLGFQHWKGLTSDNHLGAIFQQAPQKATNLMVQLLAFYRGKSLDTFLNSFPTREFEDDNEYYWDVIGSSRRNIPLVEARDENGVVVAANAANVGVGTSPFYLVFPEDWFADGEVIVGNLNQVYPFRILGDARMEGTNAVYKVELMGGNTQGVPAERLQQGERFSIEFAPVEKELSRKVGDVRFTSPVSMRNEWTTIRIQHKVAGNKLNKKLAMGIPMVRNLESGKQVKDTANMWMHYVDWEVELQFDEYKNNAMAWGTSNRNLNGEYMNFGKSGNAIKTGAGIFEQTEVANTMYYNTFSLKLLEDALYELSASKLAMDDRLFVIKTGERGAIQFHKEVLKTVSGWTTFVLDNNSTRVVEKVQSRLHSNALSAGFQFVEYKAPNGVRVRLDVDPFYDDPVRNKILHPMGGVAFSYRYDIWYIGTMDQPNIFKCKIKGDNEYRGYQWGIRNPFTGQKGNPYMSFDEDSAVIHRMATLGVCVLDPTRTMSLIPAILQG |
| Auxiliary capsid protein gp36 | D | 333 | Bacteroides Phage Crass001 | MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAGIVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYILRLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTESTPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLGMMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFCMGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEKTITLVAVDDGSHTAMNALIGAINTASGLTIATL |
| Auxiliary capsid protein gp36 | E | 333 | Bacteroides Phage Crass001 | MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAGIVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYILRLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTESTPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLGMMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFCMGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEKTITLVAVDDGSHTAMNALIGAINTASGLTIATL |
| Auxiliary capsid protein gp36 | F | 333 | Bacteroides Phage Crass001 | MVISINQVRQLYVAKALKANTAALTTAGDIVPKADTAKTTLYFQSMSPAGIVASDKINLKHVLYAKATPSEALAHKLVRYSVTLDADVSATPVAGQNYILRLAFRQYIGLSEEDQYFKYGEVIARSGMTASDFYKKMAISLAKNLENKTESTPLVNIYLISAAAASTDVPVTSATKESDLTATDYNQIIIEETEQPWVLGMMPQAFIPFTPQFLTITVDGEDRLWGVATVVTPTKTVPDGHLIADLEYFCMGARGDIYRGMGYPNIIKTTYLVDPGAVYDVLDIHYFYTGSNESVQKSEKTITLVAVDDGSHTAMNALIGAINTASGLTIATL |
| Portal vertex capsid protein gp57 | G | 104 | Bacteroides Phage Crass001 | MAGQQGIYCAPDNIVPNRDRVDVGCAPDGAMQLWVMEYEVTGIGKGCAMCKAINPQQAEMLLKSNGIYNGSSYLYKVTRIEQVIVPPCNGLMAEQVVTYKDVVS |
| Portal vertex capsid protein gp57 | H | 104 | Bacteroides Phage Crass001 | MAGQQGIYCAPDNIVPNRDRVDVGCAPDGAMQLWVMEYEVTGIGKGCAMCKAINPQQAEMLLKSNGIYNGSSYLYKVTRIEQVIVPPCNGLMAEQVVTYKDVVS |
| Head fiber trimer protein gp21 | I | 97 | Bacteroides Phage Crass001 | MKTLRTLKISPNAPDINSVWLYKGTMKYFNNGEWETIGGESEPYVLPAATTSTIGGVKKATNVGNLATGAELATVVTKVNAILSALKVADIMVEDAN |
| Head fiber trimer protein gp21 | J | 97 | Bacteroides Phage Crass001 | MKTLRTLKISPNAPDINSVWLYKGTMKYFNNGEWETIGGESEPYVLPAATTSTIGGVKKATNVGNLATGAELATVVTKVNAILSALKVADIMVEDAN |
| Head fiber trimer protein gp21 | K | 97 | Bacteroides Phage Crass001 | MKTLRTLKISPNAPDINSVWLYKGTMKYFNNGEWETIGGESEPYVLPAATTSTIGGVKKATNVGNLATGAELATVVTKVNAILSALKVADIMVEDAN |
| Portal protein gp20 | L | 806 | Bacteroides Phage Crass001 | MADFLNFPRQMLPFSKKTKQWRKDCLLWANQKTFFNYSLVRKSVIHKKINYDLLNGRLHMSDLELVLNPDGIKAAYIPDRLQHYPIMNSKLNVLRGEESKRVFDFKVVVTNPNAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEWQDIREVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPVIERVNPLKIRIFKSGYSNKVEDADMIILEDYWSPGRVIDTYYDVLSPKDIKYIETMPDYIGQGAVDQMDNIDERYGFVNQNMIGDEITVRDGTYFFDPANLFTEGIANSLLPYDLAGNLRVLRLYWKSKRKILKVKSYDPETGEEEWNFYPENYVVNKEAGEEVQSFWVNEAWEGTMIGNEIFVNMRPRLIQYNRLNNPSRCHFGIVGSIYNLNDSRPFSLVDMMKPYNYLYDAIHDRLNKAIASNWGSILELDLSKVPKGWDVGKWMYYARVNHIAVIDSFKEGTIGASTGKLAGALNNAGKGMIETNIGNYIQQQINLLEFIKMEMADVAGISKQREGQISQRETVGGVERATLQSSHITEWLFTIHDDVKKRALECFLETAKVALKGRNKKFQYILSDTSTRVMEIDGDEFAEADYGLVVDNSNGTQELQQKLDTLAQAALQTQTLSFSTITKLYTSSSLAEKQRLIEKDEKQIRERQAQAQKEQLEAQQQIAAMQQQQKEAELLQKEEANIRDNQTKIIIAQIQSEGGPDEEDGIMIDDYSPEAKANLAEKIREFDEKLKLDKDKLKLDKKKAETDASIKRQALRKKSSTTNK |
| Portal protein gp20 | M | 806 | Bacteroides Phage Crass001 | MADFLNFPRQMLPFSKKTKQWRKDCLLWANQKTFFNYSLVRKSVIHKKINYDLLNGRLHMSDLELVLNPDGIKAAYIPDRLQHYPIMNSKLNVLRGEESKRVFDFKVVVTNPNAISEIEDNKKNELLQRLQEMITDTSISEDEYNIKLEKLNDYYTYEWQDIREVRANELLNHYIKEYDIPLIFNNGFMDAMTCGEEIYQCDIVGGEPVIERVNPLKIRIFKSGYSNKVEDADMIILEDYWSPGRVIDTYYDVLSPKDIKYIETMPDYIGQGAVDQMDNIDERYGFVNQNMIGDEITVRDGTYFFDPANLFTEGIANSLLPYDLAGNLRVLRLYWKSKRKILKVKSYDPETGEEEWNFYPENYVVNKEAGEEVQSFWVNEAWEGTMIGNEIFVNMRPRLIQYNRLNNPSRCHFGIVGSIYNLNDSRPFSLVDMMKPYNYLYDAIHDRLNKAIASNWGSILELDLSKVPKGWDVGKWMYYARVNHIAVIDSFKEGTIGASTGKLAGALNNAGKGMIETNIGNYIQQQINLLEFIKMEMADVAGISKQREGQISQRETVGGVERATLQSSHITEWLFTIHDDVKKRALECFLETAKVALKGRNKKFQYILSDTSTRVMEIDGDEFAEADYGLVVDNSNGTQELQQKLDTLAQAALQTQTLSFSTITKLYTSSSLAEKQRLIEKDEKQIRERQAQAQKEQLEAQQQIAAMQQQQKEAELLQKEEANIRDNQTKIIIAQIQSEGGPDEEDGIMIDDYSPEAKANLAEKIREFDEKLKLDKDKLKLDKKKAETDASIKRQALRKKSSTTNK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-12-24 Deposition Author(s): Antson, A.A. , Bayfield, O.W. , Hawkins, D.E.D.P. , Hill, C. , Khokhlova, E.V. , Koonin, E.V. , Shkoporov, A.N. , Smith, J.L.R. , Yutin, N.