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7QIW

Specific features and methylation sites of a plant ribosome. 60s ribosomal subunit.

PDB DOI: 10.2210/pdb7qiw/pdb

Classification: RIBOSOME
Organism(s): Moorella Thermoacetica

Deposited: 2021-12-16
Deposition Author(s): Amunts, A. , Cottilli, P. , Itoh, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.35 Å

7qiw
Literature

Specific features and methylation sites of a plant ribosome. 60s ribosomal subunit.

Amunts, A. , Cottilli, P. , Itoh, Y.

Primary Citation of Related Structures: 7QIW


Proteins
Molecule Chains Sequence Length Organism Sequence
60S ribosomal protein L29 D 60 Moorella Thermoacetica MAKSKNHTAHNQSYKAHRNGIKKPKSHRHSSTKGMDPKFLRNQRYARKHNKKNGETAAEE
60S ribosomal protein L38 M 69 Moorella Thermoacetica MPKQIHEIKDFLLTARRKDARTVKIKKNKDMVKFKVRCSKYLYTLCVSDFEKADKLKQSLPPGLSVQDL
60S ribosomal protein eL39 N 51 Moorella Thermoacetica MPSHKSFMIKKKLAKKQRQNRPIPYWIRMRTDNTIRYNAKRRHWRRTKLGF
Ubiquitin-like domain-containing protein O 128 Moorella Thermoacetica MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGIIEPSLMALARKYNQEKMICRKCYARLHPRAVNCRKRKCGHSNQLRPKKKIK
60S ribosomal protein eL42 P 105 Moorella Thermoacetica MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF
60S ribosomal protein eL43 Q 92 Moorella Thermoacetica MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQTES
Ribosomal_L28e domain-containing protein R 143 Moorella Thermoacetica MTTVPGQLVWEIVKKNNSFLVKEFGNGTAGVVFSKEPNNLYNLHSYKHSGLANKKTVTIQPDGKDKSVLLATSKTKKQNKPSRLLNKSVMKKEFSRMAKAVTNQVGDNYYRPDLKKAALARLSAVHRSLKVTKSGAKKRNRQA
Ribosomal protein L19 T 213 Moorella Thermoacetica MVSLKLQKRLAASVLKCGRGKVWLDPNEGNEISMANSRQNIRKLVKDGFIIRKPTKIHSRSRARRMKEAKRKGRHSGYGKRKGTREARLPTKVLWMRRLRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMENIHKTKAEKAREKTLSDQFEARRAKNKASRERKFARRKKRLAQGPGGEKPVQPAAPAAAAPAQPAQGSKKSKK
60S ribosomal protein L18a U 178 Moorella Thermoacetica MVTYKFHQYQVVGRALPSENDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKYPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRHHCIQIIKTATIPAKLCKRESTKQFHDSKIKFPLVFKKVRPPSRKLKTTYKATKPNLFM
60S ribosomal protein eL21 V 164 Moorella Thermoacetica MPAGHGLRSRTRDSFSRAFRKKGTIALSTYLRIFKIGDYVDIKVNGAIHKGMPHKFYHGRTGRVWNVTKRAVGVEVNKQVRNKILRKRIHVRIEHVQQSRCTEEVRERIKKNDQLKADAKARGEVISTKRQPLGPKPGFMVEGATLETVTPIPYDVVNDLKGGY
60S ribosomal protein eL31 F 120 Moorella Thermoacetica MVEKTKGRKEEVVSREYTINLHKRLHGCTFKKKAPTAIKEIRKFAQKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAEGLKGLGTKIIEDEE
60S ribosomal protein eL22 W 124 Moorella Thermoacetica MSRAAAAVKGGKKKGASFVIDCSKPVEDSIMEIASLDKFLQERIKVGGKAGALGDSVTVTRDKNKITVTCNSTFSKRYLKYLVKKYLKKNNVRDWLRVIASNKDRNVYELRYFNIAENEADEED
60S ribosomal protein uL14 X 140 Moorella Thermoacetica MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVMPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV
TRASH domain-containing protein Y 165 Moorella Thermoacetica MMVLKTELCRFSGAKIYPGRGIRFIRSDSQVFLFVNSKCKHYFHNKLKPSKLTWTAMYRKQHKKDIAQEAAKKRRRTTKKPYSRSIVGATLEVIQKKRTERPEVRDAAREAALREIKERIKKTKDEKKAKKAEVQAKSQKAGGKGNMSKGGASKGPKLGGGGGKR
Ribosomal_L23eN domain-containing protein Z 154 Moorella Thermoacetica MAPAKVDLTKKKDPKAQAVKAAKAVKSGSTFKKKSSKIRTKVTFHRPKTLKKDRSPKYPRVSAPGRNRLDQYAILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQIKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
KOW domain-containing protein A 146 Moorella Thermoacetica MKYNPRVSSSRRKSRKAHFTAPSSVRRVLMSAPLSSELRAKYNVRSMPVRKDDEVQVVRGTYKGREGKVVQVYRKKWVIHIERITREKVNGSTVNVGINPSKVVVSKLRLDKDRRSLLDRKAKGRAAADKDKGTKFTTEEIMQAID
60S ribosomal protein L27 B 135 Moorella Thermoacetica MVKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISKYPKKVIRKDSAKKQAKKSRVKAFIKLVNYNHIMPTRYTLDVDLKDVVNADVLQARDKKVTAAKETKARFEERFKTGKNRWFFTKLRF
Putative 60S ribosomal protein L27a-3-like C 148 Moorella Thermoacetica MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRYFHKLRNKFYCPTVNIDTLWSLVPQEVKDKAAANKGTAPLIDVTQFGYFKVLGKGVLPTGQPVVVKAKLISKNAEKKIKENGGAVVLTA
Ribosomal protein L3 E 389 Moorella Thermoacetica MSHRKFEHPRHGSLGFLPRKRAARHRGKVKAFPKDDPSKPCKLTAFLGYKAGMTHIVREVEKPGSKLHKKETCEAVTIVETPPMVIVGVVGYVKTPRGLRCLNTVWAQHLSEDIKRRFYKNWCKSKKKAFLKYSKKYETDEGKKDIQAQLEKLKKYACVIRVLAHTQIRKMKGLKQKKAHLMEIQVNGGSIAQKVDFAYGFFEKQVPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTEMNKKVYKLGKVGQESHTALTEFDRTEKDITPIGGFPHYGVVKEDYLLIKGCCVGTKKRVVTLRQSLLNQTSRVALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA
Ribosomal_L18_c domain-containing protein G 301 Moorella Thermoacetica MAFIKVQKTRAYFKRFQVKFKRRREGKTDYRARNRLINQDKNKYNTPKYRFVVRFTNKDIIAQIVSASIAGDMILASAYANELPHYGLEVGLTNYAAAYCTGLLLARRVLKKLEMDEEYEGNLEVNGEDYSVEPAESRRPFRALLDVGLLRTTTGNRVFGALKGALDGGLDIPHSEKRFAGFSKDSKQLDADVHRKYIYGGHVATYMQTLIEDEPEKYQTHFSQYIKKGFEADGLEEMYKKVHAAIRADPSPKKSEKQPPKQHKRYNLKKLTYEERKAKLIERLNALNSAAGNDDDDEDDE
Ribosomal_L6e_N domain-containing protein H 229 Moorella Thermoacetica MAAKKTIRNPELIRGVGKFSRSKMYHKKGLWAIKKKNGGKLPLHEKKPAVAVAAVKPPKFYPADDVKKPLVNKHKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLTSGLLLVTGPFKLNGVPLRRVNQAYVIGTSTKVDVSGVNVEKIDDKYFAKQVEKKQKKGEGEFFEDKKEEKNVLPQEKKDEQKTVDSALLKAIEGIPELKAYLSARFSLKSGMKPHELVF
Thaliana 60S ribosomal protein L7 I 242 Moorella Thermoacetica MGEGGVVVPESVLKKQKRNEEWALVKKQELAVAKKKSVENRKLIYNRAKQYAKEYSEQEKELIRLKREARLKGGFYVDPEAKLLFIIRIRGINAMPPQTKKILQLLRLRQIFNGVFLKVNKATVNMLHRVEPYVTYGYPNLKSIKELIYKRGYGKVDKQRIALTDNAVVEQVLGKHGIICIEDLVHEIITVGPHFKEANNFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFINELIRRMN
Ribosomal_L7Ae domain-containing protein J 258 Moorella Thermoacetica MAPKKGVAVSAKKKPEKAKVLNPLFEKRPKQFGIGGALPPKKDVTRNVRWPRNVTLQRKKRILKMRLKVPPALNQFTKTLDKNLATTLFKMLLKYRPEDKAAKKERLVKRAQAEAEGKTPETKKPIIVKYGLKHITYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGSIVHKKTASALCLTTVKNEDKMEFSRVLEAIKANFNDKYEENRKKWGGGIMGSKSQARTKAKERVLAKEAAQRLN
60S ribosomal protein uL6 K 194 Moorella Thermoacetica MKTILSSETMDIPDGITIKVKAKQIEVEGPRGKLTRNFKHLNLDFQLIKDEETGKKKLKIDAWFGSRKTTAAIRTALSHVENLITGVTKGYRYKMRFVYAHFPINASISGGNKSIEIRNFLGEKKVRKVDMLDGVTVVRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKGRIAEEE
60S ribosomal protein L10 L 220 Moorella Thermoacetica MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMTKSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGVCARVAIGQVLLSVRCKDGNANHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRTDYLKYKSENRIVPDGVNAKLLGCHGRLAARQPGRAFLEAAN

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA s 2 NA CA
25S rRNA 2 3391 NA GCGACCCCAGGUCAGGCGGGAUUACCCGCUGAGUUUAAGCAUAUCAAUAAGCGGAGGAAAAGAAACUUACAAGGAUUCCCCUAGUAACGGCGAGCGAACCGGGAACAGCCCAGCCUUAGAAUCGGGCGGCUCCGUCGUCCGAAUUGUAGUCUGGAGAAGCGUCCUCAGCGGCGGACCGGGCCCAAGUCCCCUGGAAGGGGGCGCCGGAGAGGGUGAGAGCCCCGUCGUGCCCGGACCCUGUCGCACCACGAGGCGCUGUCUACGAGUCGGGUUGUUUGGGAAUGCAGCCCAAAUCGGGCGGUGAAUUCCGUCCAAGGCUAAAUACUGGCGAGAGACCGAUAGCGAACAAGUACCGCGAGGGAAAGAUGAAAAGGACUUUGAAAAGAGAGUCAAAGAGUGCUUGAAAUUGUCGGGAGGGAAGCGGAUGGGGGCCGGCGAUGCGCCCCGGUCGGAUGUGGAACGGCGACGAGCCGGUCCGCCGAUCGACUCGGGGCGUGGACCAGCGUGGAUUGGGGGGGCGGCCAAAGCCCGGGCUCUCGAUACGCCCGUGGAACGCCGUCUCCCCGAUUGUGGAAGGCAGCGCGCGCCUCCGGCGUGCUUCGGCAUCUGCGCGCUCCGGACGCUGGCCUGUGGGCUCCCCAUUCGACCCGUCUUGAAACACGGACCAAGGAGUCUGACAUGUGUGCGAGUCAACGGGCGAGUAAACCCGUAAGGCGUAAGGAAGCUGAUUGGUGGGAUCCCCCUGAGGGGUGCACCGCCGACCGACCUUGAUCUUCUGAGAAGGGUUCGAGUGUGAGCAUACCUGUCGGGACCCGAAAGAUGGUGAACUAUGCCUGAGCGGGGCGAAGCCAGAGGAAACUCUGGUGGAGGCCCGCAGCGAUACUGACGUGCAAAUCGUUCGUCUGACUUGGGUAUAGGGGCGAAAGACUAAUCGAACCGUCUAGUAGCUGGUUCCCUCCGAAGUUUCCCUCAGGAUAGCUGGAGCUCGCGUGCGAGUUCUAUCGGGUAAAGCCAAUGAUUAGAGGCCUCGGGGGCGCAACGCCCUCGACCUAUUCUCAAACUUUAAAUAGGUAGGACGGCGCGGCUGCUUUGUUGAGCCGCGCCACGGAAUCAAGAGCUCCAAGUGGGCCAUUUUUGGUAAGCAGAACUGGCGAUGCGGGAUGAACCGGAAGCCGGGUUACGGUGCCAAACUGCGCGCUAACCUAGAUCCCACAAAGGGUGUUGGUCGAUUAAGACAGCAGGACGGUGGUCAUGGAAGUCGAAAUCCGCUAAGGAGUGUGUAACAACUCACCUGCCGAAUCAACUAGCCCCGAAAAUGGAUGGCGCUUAAGCGCGCGACCUACACCCGGCCGUCGGGGCAAGUGCCAGGCCCCGAUGAGUAGGAGGGCGCGGCGGUCGCUGCAAAACCUUGGGCGCGAGCCUGGGCGGAGCGGCCGUCGGUGCAGAUCUUGGUGGUAGUAGCAAAUAUUCAAAUGAGAACUUUGAAGGCCGAAGAGGGGAAAGGUUCCAUGUGAACGGCACUUGCACAUGGGUUAGUCGAUCCUAAGGGUCGGGGGAACCCCGACAGAUAGCGCGUUUCGCGCGUACUCCGAAAGGGAAUCGGGUUAAAAUUCCUGAACCGGGACGUGGCGGUUGACGGCAACGUUAGGAAGUCCGGAGACGUCGGCGGGAGCCUCGGGAAGAGUUAUCUUUUCUGUUUAACAGCCUGCCCACCCUGGAAUCGGCUCAGCCGGAGGUAGGGUCCAGCGGCUGGAAGAGCACCGCACGUCGCGUGGUGUCCGGUGCGCUCCCGGCGGCCCUUGAAAAUCCGGAGGACCGAAUGCCGUCCACGCCCGGUCGUACUCAUAACCGCAUCAGGUCUCCAAGGUGAACAGCCUCUGGUCGAUGGAACAAUGUAGGCAAGGGAAGUCGGCAAAAUGGAUCCGUAACUUCGGGAAAAGGAUUGGCUCUGAGGGCUGGGCACGGGGGUCCCAGUCCCGAACCCGUCGGCUGUCGGUGGACUGCUCGAGCUGCUCCCGCGGCGAGAGCGGGUCGCCGCGUGCCGGCCGGGGGACGGACUGGGAACGGUUCCUUCGGGGGCCUUCCCCGGGCGUCGAACAGCCAACUCAGAACUGGUACGGACAAGGGGAAUCCGACUGUUUAAUUAAAACAAAGCAUUGCGAUGGUCCCAACGGAUGUUUACGCAAUGUGAUUUCUGCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACGCGCAUGAAUGGAUUAACGAGAUUCCCACUGUCCCUGUCUACUAUCCAGCGAAACCACAGCCAAGGGAACGGGCUUGGCAGAAUCAGCGGGGAAAGAAGACCCUGUUGAGCUUGACUCUAGUCCGACUUUGUGAAAUGACUUGAGAGGUGUAGUAUAAGUGGGAGCCGAAAGGCGAAAGUGAAAUACCACUACUUUUAACGUUAUUUUACUUAUUCCGUGAAUCGGAAGCGGGGCACUGCCCCUCUUUUUGGACCCAAGGCUCGCUUCGCGGGCCGAUCCGGGCGGAAGACAUUGUCAGGUGGGGAGUUUGGCUGGGGCGGCACAUCUGUUAAAAGAUAACGCAGGUGUCCUAAGAUGAGCUCAACGAGAACAGAAAUCUCGUGUGGAACAGAAGGGUAAAAGCUCGUUUGAUUCUGAUUUCCAGUACGAAUACGAACCGUGAAAGCGUGGCCUAACGAUCCUUUAGACCUUCGGAAUUCGAAGCUAGAGGUGUCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCAGCCAAGCGUUCAUAGCGACGUUGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUAUCAUUGUGAAGCAGAAUUCACCAAGUGUUGGAUUGUUCACCCACCAAUAGGGAACGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGAUGACAGUGUCGCAAUAGUAAUUCAACCUAGUACGAGAGGAACCGUUGAUUCACACAAUUGGCCAUCGCGCUUGGUUGAAAAGCCAGUGGCGCGAAGCUACCGUGUGCUGGAUUAUGACUGAACGCCUCUAAGUCAGAAUCCGGGCUAGAAGCGACGCAUGCGCCCGCCGUCCGCUUGCCGACCCGCAGUAGGGGCCUUUGGCCCCCAAGGGCACGUGUCGUUGGCUAAGUCGCCGCGACGGAAGCGUCGCGGUGACCGCCUUGAAGUACAAUUUCCAUCGAGCGGCGGGUAGAAUCCUUUGCAGACGACUUAAAUACGCGACGGGGUAUUGUAAGUGGCAGAGUGGCCUUGCUGCCACGAUCCACUGAGAUUCAGCCCUUUGUCGCUCCGAUUCGU
5S rRNA 5 120 NA GGAUGCGAUCAUACCAGCACUAACGCACCGGAUCCCAUCAGAACUCCGAAGUUAAGCGUGCUUGGGCGAGAGUAGUACUAGGAUGGGUGACCCCCUGGGAAGUCCUCGUGUUGCAUCCCU
5.8S rRNA 8 165 NA ACAAACGACUCUCGGCAACGGAUAUCUCGGCUCUCGCAUCGAUGAAGAACGUAGCGAAAUGCGAUACUUGGUGUGAAUUGCAGAAUCCCGUGAACCAUCGAGUCUUUGAACGCAAGUUGCGCCCGAAGCCAUUUGGCCGAGGGCACGUCUGCCUGGGCGUCACGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-12-16
Deposition Author(s): Amunts, A. , Cottilli, P. , Itoh, Y.