7Q5Y
Structure of nadh:ubichinon oxidoreductase (complex i) of the hyperthermophilic eubacterium aquifex aeolicus
PDB DOI: 10.2210/pdb7q5y/pdb
Classification: OXIDOREDUCTASE Organism(s): Aquifex Aeolicus (Strain Vf5)
Deposited: 2021-11-05 Deposition Author(s): Ermler, U. , Peng, G. , Warkentin, E.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.7 Å
Structure of nadh:ubichinon oxidoreductase (complex i) of the hyperthermophilic eubacterium aquifex aeolicus
Ermler, U. , Peng, G. , Warkentin, E.
Primary Citation of Related Structures: 7Q5Y
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase I chain G | A | 632 | Aquifex Aeolicus (Strain Vf5) | MSEKVKIYIDDVEIEAEKGKTVLQVALENGIDIPYFCYHPRLSIAGACRMCVVYWEDINRLVISCNLPVQEGMRVRTHRTSEMVREQQKYLLQALMTRHPLDCPICDKAGECDLQNLGAIYGPQKQIVPISALEKEREEHDWESDFLEYYSNRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAIISKPFKYWSRSWLLEKGRTVCNLCPVGCEIQIEYGVGDWRSKRKVYRTKPTDELNICAKGFFGYDSINHKRLLKTKVGKREETPGNVVNLLTTILTEHGGKTGIVFSAYLPKEVIDEVLRIAKASQAYVTAPQSVDLFKFLDELEEYDFPTVKEFEKADAFVFIGDDITSVATVLSYYTKKKVYKIGKSVRDEKLQPEEITYEDLQNLEGNVFVLVTPHALNGEIKEVATKLKELKREKGFKVIPVPKDANALYLYEVLKGIYSDLPAVMEACERGDIENLIIFGEDILEFYEDKVFEELKEKLEHLVVVSPYEDGLSEYAHIKIPMSLMGENEGTYKTFFGEVKGKKFLPWAFDDLAFWKYLGENFKEEKGLKVVKSSSNLRRRFEPHLYRNNWITQRSQNLSRLYEKNKDITVYYERSV |
| NADH dehydrogenase I chain G | G | 632 | Aquifex Aeolicus (Strain Vf5) | MSEKVKIYIDDVEIEAEKGKTVLQVALENGIDIPYFCYHPRLSIAGACRMCVVYWEDINRLVISCNLPVQEGMRVRTHRTSEMVREQQKYLLQALMTRHPLDCPICDKAGECDLQNLGAIYGPQKQIVPISALEKEREEHDWESDFLEYYSNRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAIISKPFKYWSRSWLLEKGRTVCNLCPVGCEIQIEYGVGDWRSKRKVYRTKPTDELNICAKGFFGYDSINHKRLLKTKVGKREETPGNVVNLLTTILTEHGGKTGIVFSAYLPKEVIDEVLRIAKASQAYVTAPQSVDLFKFLDELEEYDFPTVKEFEKADAFVFIGDDITSVATVLSYYTKKKVYKIGKSVRDEKLQPEEITYEDLQNLEGNVFVLVTPHALNGEIKEVATKLKELKREKGFKVIPVPKDANALYLYEVLKGIYSDLPAVMEACERGDIENLIIFGEDILEFYEDKVFEELKEKLEHLVVVSPYEDGLSEYAHIKIPMSLMGENEGTYKTFFGEVKGKKFLPWAFDDLAFWKYLGENFKEEKGLKVVKSSSNLRRRFEPHLYRNNWITQRSQNLSRLYEKNKDITVYYERSV |
| NADH dehydrogenase I chain G | M | 632 | Aquifex Aeolicus (Strain Vf5) | MSEKVKIYIDDVEIEAEKGKTVLQVALENGIDIPYFCYHPRLSIAGACRMCVVYWEDINRLVISCNLPVQEGMRVRTHRTSEMVREQQKYLLQALMTRHPLDCPICDKAGECDLQNLGAIYGPQKQIVPISALEKEREEHDWESDFLEYYSNRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAIISKPFKYWSRSWLLEKGRTVCNLCPVGCEIQIEYGVGDWRSKRKVYRTKPTDELNICAKGFFGYDSINHKRLLKTKVGKREETPGNVVNLLTTILTEHGGKTGIVFSAYLPKEVIDEVLRIAKASQAYVTAPQSVDLFKFLDELEEYDFPTVKEFEKADAFVFIGDDITSVATVLSYYTKKKVYKIGKSVRDEKLQPEEITYEDLQNLEGNVFVLVTPHALNGEIKEVATKLKELKREKGFKVIPVPKDANALYLYEVLKGIYSDLPAVMEACERGDIENLIIFGEDILEFYEDKVFEELKEKLEHLVVVSPYEDGLSEYAHIKIPMSLMGENEGTYKTFFGEVKGKKFLPWAFDDLAFWKYLGENFKEEKGLKVVKSSSNLRRRFEPHLYRNNWITQRSQNLSRLYEKNKDITVYYERSV |
| NADH dehydrogenase I chain G | S | 632 | Aquifex Aeolicus (Strain Vf5) | MSEKVKIYIDDVEIEAEKGKTVLQVALENGIDIPYFCYHPRLSIAGACRMCVVYWEDINRLVISCNLPVQEGMRVRTHRTSEMVREQQKYLLQALMTRHPLDCPICDKAGECDLQNLGAIYGPQKQIVPISALEKEREEHDWESDFLEYYSNRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAIISKPFKYWSRSWLLEKGRTVCNLCPVGCEIQIEYGVGDWRSKRKVYRTKPTDELNICAKGFFGYDSINHKRLLKTKVGKREETPGNVVNLLTTILTEHGGKTGIVFSAYLPKEVIDEVLRIAKASQAYVTAPQSVDLFKFLDELEEYDFPTVKEFEKADAFVFIGDDITSVATVLSYYTKKKVYKIGKSVRDEKLQPEEITYEDLQNLEGNVFVLVTPHALNGEIKEVATKLKELKREKGFKVIPVPKDANALYLYEVLKGIYSDLPAVMEACERGDIENLIIFGEDILEFYEDKVFEELKEKLEHLVVVSPYEDGLSEYAHIKIPMSLMGENEGTYKTFFGEVKGKKFLPWAFDDLAFWKYLGENFKEEKGLKVVKSSSNLRRRFEPHLYRNNWITQRSQNLSRLYEKNKDITVYYERSV |
| NADH-quinone oxidoreductase subunit C/D 2 | B | 586 | Aquifex Aeolicus (Strain Vf5) | MKWVNKGTVERVKQEFKDEVKYYETKHTKGFEVSHDFLKPLLKFLKERERFLHFVDMTCIDFPEHPNRFQGVYILYNPEENERVIVKSWAKDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMWEGYEHYPLRKDFPLQGIPEVELPSLTEVLHGRTDPPSHDFELVHTKLPTLEDLERTEKARLKKKAELVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNRLKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGALYNLSIFPKLIQGRTIADAIALLGSLDPVVGETDR |
| NADH-quinone oxidoreductase subunit C/D 2 | H | 586 | Aquifex Aeolicus (Strain Vf5) | MKWVNKGTVERVKQEFKDEVKYYETKHTKGFEVSHDFLKPLLKFLKERERFLHFVDMTCIDFPEHPNRFQGVYILYNPEENERVIVKSWAKDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMWEGYEHYPLRKDFPLQGIPEVELPSLTEVLHGRTDPPSHDFELVHTKLPTLEDLERTEKARLKKKAELVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNRLKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGALYNLSIFPKLIQGRTIADAIALLGSLDPVVGETDR |
| NADH-quinone oxidoreductase subunit C/D 2 | N | 586 | Aquifex Aeolicus (Strain Vf5) | MKWVNKGTVERVKQEFKDEVKYYETKHTKGFEVSHDFLKPLLKFLKERERFLHFVDMTCIDFPEHPNRFQGVYILYNPEENERVIVKSWAKDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMWEGYEHYPLRKDFPLQGIPEVELPSLTEVLHGRTDPPSHDFELVHTKLPTLEDLERTEKARLKKKAELVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNRLKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGALYNLSIFPKLIQGRTIADAIALLGSLDPVVGETDR |
| NADH-quinone oxidoreductase subunit C/D 2 | T | 586 | Aquifex Aeolicus (Strain Vf5) | MKWVNKGTVERVKQEFKDEVKYYETKHTKGFEVSHDFLKPLLKFLKERERFLHFVDMTCIDFPEHPNRFQGVYILYNPEENERVIVKSWAKDGKLPTVEDLWPGAKWAEREAYDMFGVVFEGHENLRRMFMWEGYEHYPLRKDFPLQGIPEVELPSLTEVLHGRTDPPSHDFELVHTKLPTLEDLERTEKARLKKKAELVLNWGPLHPGTHGTIWFLFDLEGEKVVQSDVILGQLHRGMEKLAENLHYFQFIPYTDRMDYISAICNELAYVETVERLLGVEVPEKARYIRTMFAELQRINSHLLWLGTGALDLGALTVFLYAFREREKIMDIIEGNAGYRLTSCFLRIGGVHYDLAEGTLDVVKHFIKDFPNRLKEYHTLLTRNRIWLRRTKDVGVITREDVHNYGLSGPVARGSGVPYDLRKLQPYAAYDEVEFDIPVGEVGDVYDRYLVRMEEMAQSVRIIEQCVQKLEKLPKDAPYLNKEHPAVIPPKEDVFHDLESMVKSFRVVVHGEDAPPGEVYFAGENPRGELGFFIYSKGGGKPYRTRIRSGALYNLSIFPKLIQGRTIADAIALLGSLDPVVGETDR |
| NADH-quinone oxidoreductase subunit F | C | 426 | Aquifex Aeolicus (Strain Vf5) | MRSYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSSEELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSASLPL |
| NADH-quinone oxidoreductase subunit F | I | 426 | Aquifex Aeolicus (Strain Vf5) | MRSYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSSEELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSASLPL |
| NADH-quinone oxidoreductase subunit F | O | 426 | Aquifex Aeolicus (Strain Vf5) | MRSYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSSEELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSASLPL |
| NADH-quinone oxidoreductase subunit F | U | 426 | Aquifex Aeolicus (Strain Vf5) | MRSYPAIPRIYAETTLNMLLKRAKKPRVHSIDEYLKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPGPRYFICNADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEEAKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGLWGKPTVVNNVETIANVPFIISMGWEEYRYIGPSDYAGPKLFPVSGKVKKPGVYELPMNTTLREVIFKYAGGTLGNKKVKAVFSGALDCFSSEELDIPMDYSPLGFGGTGTVIVLTEEDDIVEAALKIAEFYEHETCGQCTPCRVGCYEQANLLEKIYKGEATEQDWEGFDFVNRNIQPTSICGLGAVAGRLIRQTLEKFPEEWEKYRKKSASLPL |
| NADH-quinone oxidoreductase subunit I | D | 201 | Aquifex Aeolicus (Strain Vf5) | MGVKKLSRKDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQRRGNEPDRIWPNDEEREKLWGKIEWSG |
| NADH-quinone oxidoreductase subunit I | J | 201 | Aquifex Aeolicus (Strain Vf5) | MGVKKLSRKDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQRRGNEPDRIWPNDEEREKLWGKIEWSG |
| NADH-quinone oxidoreductase subunit I | P | 201 | Aquifex Aeolicus (Strain Vf5) | MGVKKLSRKDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQRRGNEPDRIWPNDEEREKLWGKIEWSG |
| NADH-quinone oxidoreductase subunit I | V | 201 | Aquifex Aeolicus (Strain Vf5) | MGVKKLSRKDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEPDSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCLFCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQRRGNEPDRIWPNDEEREKLWGKIEWSG |
| NADH-quinone oxidoreductase subunit E | E | 160 | Aquifex Aeolicus (Strain Vf5) | MFKTEFEFPEELKTKLQEHINYFPKKRQAILLCLHEIQNYYGYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT |
| NADH-quinone oxidoreductase subunit E | K | 160 | Aquifex Aeolicus (Strain Vf5) | MFKTEFEFPEELKTKLQEHINYFPKKRQAILLCLHEIQNYYGYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT |
| NADH-quinone oxidoreductase subunit E | Q | 160 | Aquifex Aeolicus (Strain Vf5) | MFKTEFEFPEELKTKLQEHINYFPKKRQAILLCLHEIQNYYGYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT |
| NADH-quinone oxidoreductase subunit E | W | 160 | Aquifex Aeolicus (Strain Vf5) | MFKTEFEFPEELKTKLQEHINYFPKKRQAILLCLHEIQNYYGYIPPESLKPLADMLELPLNHVEGVVAFYDMFDREDKAKYRIRVCVSIVCHLMGTNKLLKALENILGIKPGEVTPDGKFKIVPVQCLGACSEAPVFMVNDDEYKFESEVQLNEILSRYT |
| NADH-quinone oxidoreductase subunit B | F | 179 | Aquifex Aeolicus (Strain Vf5) | MVAINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFPTYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKIKEQGITKYDKLFADFNREIEKEGIFVPRELKV |
| NADH-quinone oxidoreductase subunit B | L | 179 | Aquifex Aeolicus (Strain Vf5) | MVAINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFPTYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKIKEQGITKYDKLFADFNREIEKEGIFVPRELKV |
| NADH-quinone oxidoreductase subunit B | R | 179 | Aquifex Aeolicus (Strain Vf5) | MVAINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFPTYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKIKEQGITKYDKLFADFNREIEKEGIFVPRELKV |
| NADH-quinone oxidoreductase subunit B | X | 179 | Aquifex Aeolicus (Strain Vf5) | MVAINSNGFVTTTVEELLRWGRRNSLWPVTIGLACCAIEMMHTAASRFDLDRLGVIFRASPRQADVLIVAGTVVNKVAPMLKLIWDQMPDPKWCISMGGCASAGGPFPTYSTLQGVDRIIPVDVYIPGCPPTPQGLIYGILQLQRKIKEQGITKYDKLFADFNREIEKEGIFVPRELKV |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2021-11-05 Deposition Author(s): Ermler, U. , Peng, G. , Warkentin, E.