7PWG
Cryo-em structure of large subunit of giardia lamblia ribosome at 2.7 a resolution
PDB DOI: 10.2210/pdb7pwg/pdb
Classification: RIBOSOME Organism(s): Giardia Lamblia Atcc 50803
Deposited: 2021-10-06 Deposition Author(s): Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.75 Å
Cryo-em structure of large subunit of giardia lamblia ribosome at 2.7 a resolution
Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.
Primary Citation of Related Structures: 7PWG
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| rRNA 28S | 1 | 2707 | NA | GCGCGGCCCGAGGCGGCGGGGGCGACGGGCGGAACUUAAGCAUAUCAGUACGCCCCGGAGGAGAAACCAACCGGGAUUCCCCGUAGCGGCGAGCGACGCGGGAGGAGCCCGCCCCGAAGGCGCGCUGUGGGGCGCAGGCGCAGGCCCGCCGCGAGGGGGCCCGAGGGCCCCGCCCGAGAGGGUGCAAGCCCCGUACGGCGGCCGCCGGGCCUGCGCGGCGAGUAGCGCUGCUUGAGCGUGCAGCGCGAAGGGAGGCGCGGCCCUUCCAAGGCUAAAUACGCCCCGGGACCGAUAGCGGACCAAGUAGCGCGAGCGAACGGUGAAAAGGACGCCCUGCGGCCGCUCAAAAGACCUGAACCCGGCCGGCCGCCGGCCCGCCGGCCCCGUCUCGAAACACGGACCGAGGAGCCACGCGCCGCGGCGAGCCCGAGGGAGCCCCCGCGGCGGAGCGAGCGCGAGACGCCCCGGGCCCGCCGCGCCCCUGCGGGCGUGCGCGGGCCGAGCCGCGGCGCGUGGGCCCGAAAGGCGGUGAUCUAUGCCCGGCGAGGGCGAGGCCGGGCGAAAGCCUGGUGGAGGCCCGCCGCGGUGCUGACGCGCAGAUCGCUCGUCGGAGCCGGGCAUGGGGGCGAAAGACUCAUCGAACCGCCUGGUAGCUGGUUGCCUCCGAAAUGUCUCCCAGGACAGCCGCCGCCCCGCAGUUGCGGCCCGUAGAGCGCUGGCCGGCGGGAGCGGGGGGCCUGCCCCUCGCCCGCCCCCCAAACUCCGAAGGGCCGCGCCGCCCCGCCGCUGGCCUGGGCGGGGCGGGCGAAUGCGGGCGGCGCGUGGGCCCCUCCUGGUAAGCAGGACGGGCGAGGCGGGACGAUCCGGACGCCGGGCCAGGGUGCGCCGCCGGGGCCCGCGGAACGGCGUCGGCCGGUCCCGACAGCUGGAAGGUGGCCCCAGAAGUCGGCAUCCUCCAGGGAGUGUGUAACAACCCACCAGCCGAAUCGGCCGGCCCGGAAAAUGGAGCGCGCCGGAGCCCCGGACCCGCGCCCGGCCGCCGCGCGCGGCGGGUAGGAGGCCGCAGAGGCCCCGGGGGCGAAGGCGGCGCGCAGGCCCCGCCGGACCGGCCUCUGGUGCAGAUCUCGGCAGCAGUAGCCGCUACUCCGCGCCCCGGAGGACUGAGGGGGAGACGGGUUCCGCGGCGCCUGCAUCUGGCCGCGGGUGACUCGGGCCUAAGCGGCGGGUGAAGACCGGGAAGGGGCGUGCCCGCCCGUCGAACGGGGAGCCGGCGGAGACUCCGGCAGGCGCGGCCCCCGCGGAGACGCCCGCCCCCCGGCGACGCGCACGGGGACCGCGGCGGGCGGCGCCCCGGCCCGCGAACGCCCCGCAGCCCCCGGACGCCUUGCGCGGAGAGGGGGGCCCGGGGGCGGACCCCGCGCGUCCCCGGCCGCCCCUGAAAAGCCGGGGGGCGCCGGCCGCGCGCCGUACCGACCGCAGCAGGACUCCGGGGUCAGCAGCCUCUAGCGCGGGAGCGAACGCGGCUCAGGGAAGUCGGCAAGCCGGCUCCGUAACCUCGGGAAAAGGAGUGGCUCUGACGGCGCGCCGGGUCAGAACUGGAACGGACGCGGGGAUCCCGACUGUUUACUAGAAACACAGCGUCGCGAGGGCCGCACCCGGCGCUGGCGCGACGUGAUUUCUGCCCAGUGCCACGACCGUCACCGUGAAGCGAUCCGCCGAAGCCCUGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCGGGCAAUUUCCGACGUGCAUGAAUGGACCAACGAGGAUCCCACUGUCCCGAGCCGCGCCUCCGCGAGCCUCCAGCCUCGGGAACGGGCGAGGGCCGGCCAGCGGGGCAAGAAGACCCUUUUGAGCUUGACUCCAGCCCGGGCCUGUGGGGCGGGGCGGCCGGCGCAGCGCACAGGGGAGGCCGCGCCCCUGAGACACCCUGACGGCCGCCGCCGCCCCGCUCACCCGGUCGCGCGGGGACCCGCCCGGGCGGGGAGUUCGGCUGGGGCGGCGCGCCUGCUACACCGGACCGCAGGCGUCCCACGGCGGGCUCAGCGAGGACGGAGACCUCCCGCGGAGCAGAAGGGCACAAGCCCGCCCGACCCGCGCCCCCCGUGCCGGCGCGGGCCGCGAAAGCGGGGCCUACCGAUCCUUCGCCGCCCCGGCCGCGGGCGCGGAGGUGGCAGAAAAGUUACCACAGGGAUAACUGGCUUGUGGCCGCCGAGCGCCCGCAGCGACGCGGCUUUUUGAUCCUUCGAUGUCGGCUCUUCCUACCGUCCGCGCGCACCGGCGCGGAAGCGUCGGAUUGUUCACCCGUUCAAGGGAUCGUGAGCUGGGUUUAGACCGUCGUGAGACAGGUUAGUUUUACCCUACUGGCCCCGGGGCCAGAGCACGGCGGGCCAGUACGAGAGGAACGCCCGCCGCGGGCGCCCAGCCCCGCGGUUGCCCGCCGGGGCAGGACCGCGCGCCCGGGCCCGGGGGCCUGGCGCUGCCGCCUCUAAAGCGCCACCCCCCCCUCCGGCCCCGCCGGGCCCGCGCCCCAGCCCCGUGCCCCCUGCCCGAGGCGGCCCCCGCCCGGGAGGACCACCCGGCGCGGCGCCCCUGUACGGCGCAGGGCCUGCGAUCGCGUUCGCCCGGGGGGCGCGCCGGGCGGGCGCGCGGCCCACUUGCU |
| rRNA 5S | 3 | 120 | NA | CAGUUCGGCCAUCCUACGGCGGAAACUCCUUAACUCGUUCCGAAUUAAGAAGAGAAGCGCCGUCAGGCCCCGCCAGUACUGCGAUCGGAGACGUCGUGGGAACACGGGGUGCCGAACCUU |
| rRNA 5.8S | 4 | 139 | NA | GAACGCCCCGCCGGCGGAUGCCUCGGCCCGGGCGGCGACGAAGAGCGCGGCGGAGCGCGAGACGCGGUGCGGACCCGCCCGCCCCGAGAAGCACCGACCCUCGAACGCAGCGCGCCCCGGCGCCGCCGCCUCGGCGCCC |
| P-site tRNA | e | 3 | NA | CCA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ribosomal protein L29 | H | 124 | Giardia Lamblia Atcc 50803 | MPGLKAKDLVGLSQEDLQRKLADLKRELLSLRTMKATAGPVPERIARFRVCKKDVARVLTVINQKARDEARAAFEGAEHIPKTFRPRLTHAMRCQLTEKQKRLLPSKLMKRKLQFPKLKYAVKV |
| Ribosomal protein L36-1 | I | 90 | Giardia Lamblia Atcc 50803 | MPGKVFNLKKGGAVVRIVRKKEERKTKPHQEFVKSIIQECTGMAPYEMHIIELLRMNKDRHALRYAKKRLGNIKRAKAKRDQLSVYARNI |
| Ribosomal protein L37 | J | 89 | Giardia Lamblia Atcc 50803 | MSKGTASFGKRHTRIHGSCRRCGKHSFHLQKHECASCGYPSAKMRRYNWSYKSLRRRTQGTGSMSHMRKVYRAYNSGTLKANARKYLAK |
| Ribosomal protein L39 | L | 51 | Giardia Lamblia Atcc 50803 | MTANKTLSRKLRLAKKTKTNKNIPRWVIAKDHLKKTWNYKRHHWRRSHLKL |
| Ubiquitin/Ribosomal protein L40e | M | 127 | Giardia Lamblia Atcc 50803 | MQLIVRSLDRTVALTASPADSLTSIRQRLLAVYSGHVVDSQRFVFAGRTLDEAKTLGDYSIGESSVLDLVPRLFGGVMEPTLINLAREYNQNMMICRHCYARNPLRATNCRRCRGTNLRKKKLSKYA |
| Ribosomal protein L15 | N | 204 | Giardia Lamblia Atcc 50803 | MGAYKYVQELWRKKQSEALHYLFRLRTWEYRQLNAIKRCSHPTRPEKARRLGYKAKRGYVVYRVRVRRGGRKRQCVHGISYGKPRNIGIVGLKPSRSLRALAEQKVGRRLPSLRVLNSYWVAQDGSYKWYEVILIDPFHPWIRNDPKINWICNPVMKRRECRGLTSAGRKARGLHNKGIGAMKLRPSKRAAWKRNHTRSLRRYR |
| Ribosomal protein L44 | O | 106 | Giardia Lamblia Atcc 50803 | MVTYPAERRTFCKREGKHTVHKASLYKKGKDSLLAQGKRRYDRKQRGFGGQTKPIFRRKAKTTKKQVIRLTCSSCKCQTFQVLKRCHRLEISRLGATKKSKGSVVF |
| Ribosomal protein L37a | P | 94 | Giardia Lamblia Atcc 50803 | MAKRTKKVGLTGKYGTRYGRAARKQLLKIETSQKAKYTCPFCAKDKVRRTACGIWTCRSCSKTMAGGAYSLHTEPANAARATIRRLRLAREDAQ |
| Ribosomal protein L18 | Q | 179 | Giardia Lamblia Atcc 50803 | MGIDLKTGIKKRKVERKEPKSPNPYIRLLHNAFKVVYENTGEDFTKVLTKRLCLSKTNRPVLSVSRLAHLMHKREDKIAVVASTVTNDERLVTIPRMTICALKFSATARSRIEKAGGRCMSFDELLAEKPTGDNCVLLQGRRSCRAVCKKFGSPGRPNSHVKPKGEHKGRRGARGRHSW |
| Ribosomal protein L19 | R | 196 | Giardia Lamblia Atcc 50803 | MANLRLQKRLAADVLKCGKRRVRFNPAHEKYIEQASSREAIRSLIESKIIAKLDIKGSSRGRIRARHAAKRLGRHSGHGKRRGTREARMPSKTLWIQRQRVLRRLLSRYRDDEKIDRHLYETLYAKAKGNMFKNKRVLLEHIVGMQKEQELEKKKKEELEQRRKKAEQRCKERAEKVAANRLAFAQTGIFTEKTNK |
| 60S ribosomal protein L18a | S | 173 | Giardia Lamblia Atcc 50803 | MMQKYIVYGRRLPSEKFPEPEVFRMTIYAPNEIVAKSRFWYHLKSLKKIKRTHGEILDCQHIEENGDFVKNFGVLLRYRSRVGQHNMYREVRETTSARAMDKVYSEMAGQCRARYHDIQIINVKEVADEDVRREKVAMFTQKGVRFPHPCPYVHVKRAARTARFQDRAPHVPQ |
| Ribosomal protein L21 | T | 159 | Giardia Lamblia Atcc 50803 | MTHSQGYRCKTRYCFARKFRRHGMANLTTYNRVYKLGQYVNIKVNGAYHKGMPHRYYNGRTGTIFNIGPRALGVQIQKRVRGRIMLKRINVRLEHVHPSDCRKNHLERVAANDAARRLAKETGQPVPCLKRQNALPRAAHVVSIASAIDITPLKYDGVF |
| Ribosomal protein eL22 | U | 171 | Giardia Lamblia Atcc 50803 | MEGQWILFPDQIVNHLCRHADHRLQARVSSKSNLKSNYAYYFSPSSEMRPRIKKCVKKEQGNIRFAVDCSAGKDLELNLNEFADYVRTHFKINNRKHGVAEKVACSVEGDSLVIQTTGYEFAKRYVKYLTKRFLYQDYQGVFRVLSTDKETYTLKPYTIEDDDDEAGTDDE |
| Ribosomal protein L23 | V | 142 | Giardia Lamblia Atcc 50803 | MASKRGRSGGIGNKFRISCGLPVGAVINCADNSGAKSLNMIAVKNWKGHLNRFPKASVGDMVLITVGRDGKPELRRKVTPAVVVRQRKVWRRKDGVWIYFQDNAGVIINPKGELKGSSITGPVAKEAADRWPKISTTAECVH |
| Ribosomal protein L23A | X | 141 | Giardia Lamblia Atcc 50803 | MSEKAQALKAQKAILHGTRVEAKKIRTNVHFFRPKTLVHKKAPLYPRNPIKKGSWDDPCDLLRYPIKTDENTTQIEKNNTIVFIVDRRASKPEIRKAFETVFETKVARVNTLITPLGLKKAFIRLAPDVQAMDVASKMGLA |
| Ribosomal protein L26 | Y | 135 | Giardia Lamblia Atcc 50803 | MKLNSAVTASRRKCRKAYFTANAETRAKMMSSRLSKELRAEHKIKTMPIRRGDIVEIFTGGHKGTGKVVEVRRRDYKICVEGINQKARNPEAKPVPYPIHPSNCIIKELYMNGSRYRAIKRRQERNAERLARIGK |
| 60S ribosomal protein L27 | Z | 135 | Giardia Lamblia Atcc 50803 | MSQPIIKPGLVCIVLQGRHAGKKAVIVEALPHNERGSYAIVAGIAALPRRITNSMSDEEAVCRGRVRSFVKCMNVNHLMPTSCRLENNYKDFISTQTVADVTKRREIIETVNKDFQRRILEHRDTWFFTKLPIDA |
| Ribosomal protein L2 | A | 251 | Giardia Lamblia Atcc 50803 | MGRRIRVQRKGAGSVFRAHVARRLGAAKLRANDFAERTGSVRGVVKAILHDRGRGAPLARVQFPNMRGEGRVNELFIAPEGMYTGQEVFSGNKATLHIGNILPVGNIPEGTYVCNVEEKPMDRGCLARASGTYCLVVAHNMETNKTRIRLPSGQKKLISSKARAMIGLVAGGGRTDKPLLKAGNAYHKYKAKRNCWPVVRGVAMNPVDHPHGGGNHQHIGVSSCVPRNAVPGQKVGLIAARRTGCSGGKRR |
| Ribosomal protein L3 | B | 379 | Giardia Lamblia Atcc 50803 | MSHRKFSCCRKGNLGYLPRKRCTRGRGRCKTFPPDVQGAPIHLTAFLGYKAGCTHVMRFIDHRGSNLHNRQAIDQATIIDAPPMICTAIIGYAKTPKGLRAVTTVWAAHIAEPAMRRFYRNYFHAEKTAFSTYMKKAADGTYIKEQLGRLKQHADVIRIVAHTQPALTPLKQKKADIMEIQVNGGANVAEKVDYAYALMEKPISIKDVFSVGAQIDTISITRGRGFEGVVTRWGVTRLPRKTRRGNRKVACIGAWHPANVQYTVARAGQMGYFHRTDTNKQVFMIDTAENPRCCTTEFDLTDKSINPVGGFVNYGRVQGDFIMIKGTCPGPKRRPVVMRNALLPHRNCPPVQLQWISTASKFGHGIFETVEERRQFYAK |
| Ribosomal protein L4 | C | 316 | Giardia Lamblia Atcc 50803 | MNPTVKVFGPTGTQVAELPRPKVFNVPLRPDIINFVHTQLRKCLRTPYAVSRYAGVQCTAHSWGPGRAVARLPRKHGGIGAYANFARGGHMAHPTTVIRRWCRKVNLNQRRYAVASALAASANAALVEARGHRIADVPSIPLVVDTDNVTKTKDALAIIKAVGVLRDVERCKDSRHIRAGRGKMRNRRYITRKGPLVIYNTEDVARGFRNLPGVDLCHVSSIRLLELAPGSHPGRLILWTKSAFASLDDVYAAKQNYTLPRSCITQTDIERILQSDAVQKTFVPKRDPLVIERKVDPFSSKEALARLDPSGTVMPK |
| Ribosomal protein L5 | D | 297 | Giardia Lamblia Atcc 50803 | MGWVKVQKTRSYFKRFQVQFRRRREGKTDYQARKALIIQDKNKYATPRYRFVVRRTNKDIICQVTAAELTKDRVVCAAYSHELPRYGIPVGLTNYAAAYATGLLCGRRLLEKLSVGIKENALAQLYPGLDKATGEEYHPDENENEEVHAFKAFLDIGLARASTGARVFAAMKGAVDAGLNIPHSMKRFPGYSKDGFDSSALRDRIMGKHVGDYMAELKAEDEETYRKRFSKYIAAKVEPLRLEAMYTKAHAAIRANPQAVKAKFEIKKPVRQARLTLKERKERIDAKKLEALKQLTK |
| Ribosomal protein L7 | F | 235 | Giardia Lamblia Atcc 50803 | MPIPELVLKHRRKVQRDIRSAAERATEKEKRAALVKDHAVKSAQVYARYYIDLVESEKKARENALKNNQLYVPDEPKVYLVVRIRGIVGVAPKVRTILSLLRLRQINNAVFMRCNKATLNALRIVDHYVTYGEPTVETIRNLIYKRGFAKVNGQRIPIVDNNLIDEQLSKHNILCAEDLVHEIFTCGSSFKEANNFLWPFQLNSAALKDKRNNFAEGGDFGYRGKYINEFVARMI |
| 60S ribosomal protein L7a | G | 225 | Giardia Lamblia Atcc 50803 | MSKVSGSDIKRALAVPENKSRSKCDFDLTPFVRWPRQVRIQRQKAVLQRRLKVPPTVNQFMNPISRNLTNEIFNLARKYSPESKEEHKARLLQIADAKANGKPLPEKSDKLVIASGIRRITSLVESKRAKLVLIANDVDPLELVLWLPTLCHKMGVPYAIVRTKGDLGKLVHLKKTTSVCFTDVNPEDKPTFDKILAAVAHEVDYAKAMKTYGGGVRREDEAQQM |
| Ribosomal L38e | K | 77 | Giardia Lamblia Atcc 50803 | MPNTITEENLMKMIADGRGKKLVVKSCSKGRLQGKVKLKLRTAKYLYTLTVPNADDAKSIVKGCKDKVEVQYVNDSE |
| Ribosomal protein L24A | W | 102 | Giardia Lamblia Atcc 50803 | MVTTNQCSYSGRKILPGYGKRMSRHDKVLLIFLNRKASVHYLNKWNPRKIRWTLASRRARGKEVIVKARERVTRKAVVSKRNFLSIDDSKLEALKSKYSRVN |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-10-06 Deposition Author(s): Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.