7PWF
Cryo-em structure of small subunit of giardia lamblia ribosome at 2.9 a resolution
PDB DOI: 10.2210/pdb7pwf/pdb
Classification: RIBOSOME Organism(s): Pediculus Humanus Subsp. Corporis
Deposited: 2021-10-06 Deposition Author(s): Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.85 Å
Cryo-em structure of small subunit of giardia lamblia ribosome at 2.9 a resolution
Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.
Primary Citation of Related Structures: 7PWF
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ribosomal protein S3 | D | 217 | Pediculus Humanus Subsp. Corporis | MPRIVRRDEENVYYSKYLNDCIMEAELHEFFSRELVDAGYASCSLCRTIDSICVIIQCAEPEVVMGDNHYRLHKIEYLLAGRFMCDPKNFNIWVDKIIKRGLSAEIMVDNLRAKLEEAMPIRRAAYSIIRTAMRAGAAGCEVIVAGKLRAQRARANKFKEGCLISTGHPKRIFLAEATRHIKMRQGVIGVKVRIYNPNIRGAVMPDKIEIGAFSRQK |
| 40S ribosomal protein S26 | A | 109 | Pediculus Humanus Subsp. Corporis | MPVKRRNNGRSKYNCGHTNIVRCQNCHRCVPKDKVIKRFTIRNIVDNTIADDVLNACVIQGFAIPKLYNKVQYCVSCSIHNHIVRVRSREDRKIRTPPKRFPRNSSQKK |
| Ribosomal protein S27 | B | 124 | Pediculus Humanus Subsp. Corporis | MTPFSRFGEHCQLNINHAVYTLKLQTNPNKFKFKSELRGAKVSMNVDLLYPDPVEEQRKHKLKRLVQGPNSYFLEIKCAGCQDIVVVYSHANTPVFCPGCTSQISIPTGGKCAFTSQVERYRQK |
| Ribosomal protein S24 | Y | 132 | Pediculus Humanus Subsp. Corporis | MPEITVKVRKVLNNPLLQRQQCVVDVLHPGCTYESKEAIKAKVAQQLKVADQKNIVLYGFKTSFGGGHTVGFCNAYQNMDALMKYEPGFRKIRCGLIEAPKPVSRKQLKNLKNRRLKKRGTEKATVTLGAKK |
| 40S ribosomal protein S25 | Z | 88 | Pediculus Humanus Subsp. Corporis | MSSKKWTKKAVKEKVDYPTLFADEAAMNEALKFIKNSKCITHTQICERLRVSVALAKRVMRQLVKSGDFAIVSKSSRMTIFKNMTKKE |
| 40S ribosomal protein S21 | V | 89 | Pediculus Humanus Subsp. Corporis | MQSDDIGMKNSSGVVVDAYIPRKCSATNRLIGPKDHAAVQLSVARVNDKGKMIENNYVTFAFCGAIRSRGGVDSAFMLLAQEHGLMERL |
| Ribosomal protein S15 | P | 145 | Pediculus Humanus Subsp. Corporis | MTDQVKTRRRGLAQPNFRGVEVEKLATMKITDILPKLNARCRRRIGKHGLSMKHLRFVNKLRLRRAAQPSQKPKIVRTHLRDMIIFPEMIGMTVSVYNGRQFIPVEIKPPMVGRALREYSMSYKIVSHGKVGIGATRSSKFVPLR |
| Ribosomal protein S17 | R | 137 | Pediculus Humanus Subsp. Corporis | MGKVRTKTIKRAARKIVENNYESLKPKDFQNNKAICSKRNVAIIPSKRLRNKVAGYVTTLMNRVVKGPVHGISLRLQEEERERRDNYAPKKSEFDVENITVSGATQQMIDSIGFKCMSTSLKVIDPTMRKRARDTRE |
| Ribosomal protein S10B | K | 134 | Pediculus Humanus Subsp. Corporis | MVHIPKAVYKAVYAHLYENASLALKEYWRVGNVPGITYVDENGKLCNPTYLHVNCIMQSLESRGVVKDTFAWRHHYYLLTEKGEQFIRKELDLTDDVLPTPYSKPSIKPPQYAQCFSSKGKPDRAPQPKPDEAK |
| Ribosomal protein S19e | T | 139 | Pediculus Humanus Subsp. Corporis | MSSVTRVPADVFINSFAAHLKNRGIIKCPAFTDYVKTGVSRQYAPRDADWFYIKAASVIRHFYISGSHSIGVAGLARKYSSLQKGKTTPHHTKRASCKVIRSIVSQFLGQKLLIAGERGRHISPNGRKMVEDFAEGLQK |
| 40S ribosomal protein S8 | I | 174 | Pediculus Humanus Subsp. Corporis | MGITHDKMYKRSKTGAVQGKWHKKRKYNLGRQPANTKLIVKVTSKKNEGQKISTIRCRGGNIKRRALRLSHGSFAWGSADISHKARILQVVYNSTSNELVRTNTLVKGCVVQIDSAPFKSALSNDTLDKEILDQIRGDHILARISSRPGQVGTADGYILEGPELLFYQKKLAPK |
| 40S ribosomal protein S4 | E | 268 | Pediculus Humanus Subsp. Corporis | MARGVRKHLKRLNAPKHWLLDKMGGIWAPRPTNGPHGLRECIPLILILRNRLHYANTYAETSMILQDKNVLIDGKPRTDPTFPVGFMDVFEIPKVHKTFRVLYDVKGRFTLVPIQSNEAGFKLCRVQKIFLGDKGMPYLSTHDARTIRFPHPDIKTNDTIKINLKTGKIDEWYKFDIGKIVMVTGGRNCGRIGTIQAIDKHMGSYTMIRMKDTEGTEFLTRLCNVFVIGNDSPAVAIPTTKGIRPDIIKNRELRLRSIAKRGGGASYE |
| Ribosomal protein eS7 | H | 190 | Pediculus Humanus Subsp. Corporis | MTFPAQRKIRKPFEKLSELEKQVAGTLLKLEDDPDLREMGLGTLYISSVKEIAVDGDKKAAVVYVPYPMLQSFQKNSEALILKLEKNHSGHRFIIVANRTIMKNAYVFTGKKSIRRPRSRTMTSVYNCILDDICYPIHVIGKRTLYPAGSNPRLQVVLPKAVYNEVSERTKTYSAVYKALTERDTEFIFM |
| Ribosomal protein S13 | N | 154 | Pediculus Humanus Subsp. Corporis | MGRMHSKGKGISRSAIPYTRAPAPWNKYTPEDVCEQICKLAKKGTPPSRIGLILRDQFAIGQVKNVTGSKIVRILKAKGLAPEIPEDLYCMIKKAVAIRKHLERSRRDKDSKFRLILVESRIHRLARYYRQARRLPPTFRYKSDQAAALLATYA |
| Ribosomal protein S2 | C | 242 | Pediculus Humanus Subsp. Corporis | MQAESAPRPERPERGERGPRQMEEEEWHPSTKLGRLVKAGKIESLYDIFKYSLPIKETEIIDYFFPKSELAEEVCNIMSVQKQTTAGQRTRFRAHVIVGNRDGFIGYGAGVSKEVANAIKKAAKNARLNIVPVRRGFWGGKLGDPHTVSSKLSGKCGSVRVRLIPAPRGAGIVASPTVAKVLEFAGVSDVFTRQSGHSRTLMNSVGAVYNALKSSYSILTPDLWKKEQLDHVQDIRTMSLAD |
| Ribosomal protein S14 | O | 145 | Pediculus Humanus Subsp. Corporis | MSRKVTYAPENLPAKNNNSEAFAVCHIYAGKNDTFIHVTDLSGRETIGRVSGGMKVKRHCDEPSAYAAMQATQDLIEIITDRGITAVHIKIRADGGTGKRVYGQGGSAAIRALVRGGIKIGRIEDSTPIPTDRTRHKGGRRGRRL |
| Ribosomal protein S15A | W | 130 | Pediculus Humanus Subsp. Corporis | MVRINVLRDALKSICNAQRIGKKQVIVRPSSKVIIEFLQLMQKNGYISDFAVVDNHRSNRIVVNLIGRLNKAGVISPRFDIPANDIEKWVVNLLPSRLFGHIILTTSQGIMDHIEAQHRQIGGKVIGYFY |
| SSU ribosomal protein S17P | L | 199 | Pediculus Humanus Subsp. Corporis | MSATKDKPQDSATAKVNGRHPLRPDPDRERRALERAENLRKAAYEMAENQHERAYHKQSQIFQGRFLRKDNARCLRFYKSIGMGYHTPITAINGTYIDKKCPFTGNVSIRGRILRGVVHSAKMQRSIIVRRDYLHFVQKYKRYERRHKHVAAHLSPCFRVKEGDIVTIGECRPLSKTIRFNVIKVEPVSEAAKKRFSPF |
| Ribosomal protein S20 | U | 126 | Pediculus Humanus Subsp. Corporis | MAESVSTGGVNLADHKDGKDMHQKYTIIVVGKDLKLVERYVKSIVKEGRAFGISGPCRAPVRRLTITTRKSPCGEGTNTWHRFELRMYKRTFWVTCGGNDISTILSKTVVIPGIQVTVEVEEPDNE |
| 40S ribosomal protein S6 | G | 248 | Pediculus Humanus Subsp. Corporis | MPKGSFCKVNISNPVTGANKSLMIEDFRKSQTIHGLRMASEFDGAALGEEYAGCTFRITGGNDAQGFPMYQGVLKSQRARLLLRQGAKCYLHRRNGERKRKSIRGCIVGPDLHALSVVLVDAGDKTLPGLTDVVVPKRLVPKRASKIRRLFGLPTTKVDPKDQMLVCELIKELGHEVTLKNGEKKLKYPKVQRVVTDEKYARKQRVIAEKKEIMRKSLQQLEEYKALLSRMGKQHNIRIYKPAKRTVE |
| Ribosomal protein S5 | F | 190 | Pediculus Humanus Subsp. Corporis | MSLEVALFNKWPLTDVKCQDESLEAYISIDNHSFVPHSAGRWSAKRFRKAKCPVVERLTNSLMMHGRNSGKKLMAMKTVGEAFELINLYTGKNPVQVLVDAVANSGPREDSCRIGKGGQVRRQSVDVSPLRRVNIGIYNIATGARKAAFRKVRPFAECLAEEIMNAAAGADKSYAISQRNSVERIAVSNR |
| Ribosomal protein S9 | J | 189 | Pediculus Humanus Subsp. Corporis | MPRISRHRNSSKTYSTPKKPFTKPRLDAELKLCGEYGLKCKREIYRARYMLAKIRRTARNLLTLDENDIKRRFEGAALLRRLHMLGILDEEKDQLDYVLGLRIEDIFKRRLQSVIVESKLAKSVHHARNMIKARHISVGGQIVNIPSYMVRISNTSRVAIADTSSLAPNGKPGRTKRAAARRQSSGDNE |
| Ribosomal protein S23 | X | 143 | Pediculus Humanus Subsp. Corporis | MSKTSGLYTARKLRTVRRVNRWADKKYRKAHLGTWLKANPLEGACMARGIVTQKIGISAKQPNSAVRKAVRVQLTKNSKKITAFVPRDGSITYIDNNDEVLVAGFGRAGRAVGDIPGCRFKVIKVAGIGLLALFLRKREKRAR |
| Ribosomal protein S18 | S | 154 | Pediculus Humanus Subsp. Corporis | MTTIVQPNDYRDLLRMFNTNIQGKVVLECALVGIKGIGRRFANVALKKANIDVHKRAGELTAAEEDALMKVLEDPLSHGIPAWMLNRNNDFESGKDMHILVNTIASTHRADLERLRKTRCERGVRHHHNLKVRGQHTKSTGRRGHVVGVQRKKK |
| Ribosomal protein S16 | Q | 158 | Pediculus Humanus Subsp. Corporis | MAKGNRRDLLERNDIEVRERDKYTVHTLGKKKNSVAVAFVKAGKGDILVNNVPLALVRPEILRTKVSEPIMILGESLFKGLDMNIKVAGGGHVSQIYAVRQAISRGVLASVKDEAARSELRAKLVSYDRQLVVSDPRRCEAKKFGGRGARARRQKSYR |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| rRNA 18S | 2 | 1452 | NA | CAUCCGGUCGAUCCUGCCGGAGCGCGACGCUCUCCCCAAGGACGAAGCCAUGCAUGCCCGCUCACCCGGGACGCGGCGGACGGCUCAGGACAACGGUUGCACCCCCCGUGGCGGUCCCUGCUAGCCGGACACCGCUGGCAACCCGGCGCCAAGACGUGCGCGCAAGGGCGGGCGCCCGCGGGCGAGCAGCGUGACGCAGCGACGGCCCGCCCGGGCUUCCGGGGCAUCACCCGGUCGGCGCGGUCGCGGCGCGCCGAGGGCCCGACGCCUGGCGGAGAAUCAGGGUUCGACUCCGGAGAGCGGGCCUGCGAGACGGCCCGCACAUCCAAGGACGGCAGCAGGCGCGGAACUUGCCCAAUGCGCGGCGCGCGGCGGCGCGACGGGGUGCGCGCGAGUCAGGCGGGCCCACCCCGACCGCCGCGGAGCGCCAGGGCAAGGUCUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCGGCGAGCGUCGCGCGGCGCUGCUGCAGUUGAAACGCCCGUAGUUGGCCCCCCGCCGCCACGAGGAAACGGGAGCGCUCCAGGCAGGCCCGUUGGACCCGCCGCGUGGGACCGCGCAGCGGGCCCGGCGCGCCGCGGCAGCCCCGAGGAGAGCGGGCGGGGGCACCGGUACCGGCCGGGGACGGGUGAAACAGGAUGAUCCCGCCGAGACCGCCGGCCGCGCAGGCGCCUGCCAAGACCGCCUCUGUCAAUCAAGGGCGAAGGCCGGGGGCUAGAAGGCGAUCAGACACCACCGUAUUCCCGGCCGUAAACGGUGCCGCCCCGCGGCCGGCGCGCGCGUCCCGCCGGCCGCCCAGGGAAACCGGGAGGCUCCGGGCUCUGGGGGGAGUAUGGCCGCAAGGCUGAAACUUGAAGGCAUUGACGGAGGGGUACCACCAGACGUGGAGUCUGCGGCUCAAUCUGACXCAACGCGCGCACCUCACCAGGCCCGGACGCGCGGAGGACCGACAGCCGGGCGCGCUUUCGCGAUCGCGCGGGCGGUGGUGCAUGGCCGCUCCCAGCCCGUGGCGCGAGCCGUCUGCUCCAUUGCGACAACGAGCGAGACCCCGGCCGCGGGCGCCGCGGGACGGCCCGCGCGAGCGGGAGGACGGCGGGGCGAUAGCAGGUCUGUGAUGCCCUCAGACGCCCUGGGCCGCACGCGCGCUACACUGGCGGGGCCAGCCGGCGCCCGCGAGGACGCGCGGAGCCCCCGCCGUGGCCGGGACCGCGGGCUGGAACGCCCCCGCGCACCAGGAAUGUCUUGUAGGCGCCCGCCCCCACCGCGCGCCGGACGCGUCCCUGCCCCUUGUACACACCGCCCGUCGCUCCUACCGACUGGGCGCUGCGGCGAGCGCCCCGGACGCGGGAAGGGCCGCGAGCCCCAGCGCCUGGAGGAAGGAGAAGUCGUAACAAGGUAUCNGUAGGUGAACCUGCGGAUGGAUCCCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-10-06 Deposition Author(s): Bashan, A. , Bose, T. , Breiner-Goldstein, E. , Cimicata, G. , Herzberg, O. , Hiregange, D.G. , Kulakova, L. , Rivalta, A. , Samiya, S. , Yonath, A. , Zimmerman, E.