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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7PNW

Mouse mitochondrial ribosome small subunit lacking m5u modification

PDB DOI: 10.2210/pdb7pnw/pdb

Classification: RIBOSOME
Organism(s): Mus Musculus

Deposited: 2021-09-08
Deposition Author(s): Amunts, A. , Itoh, Y. , Khawaja, A. , Laptev, I. , Rorbach, J. , Sergiev, P.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.09 Å

Literature

Mouse mitochondrial ribosome small subunit lacking m5u modification

Amunts, A. , Itoh, Y. , Khawaja, A. , Laptev, I. , Rorbach, J. , Sergiev, P.

Primary Citation of Related Structures: 7PNW


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
12S mitochondrial rRNA a 956 NA AAAGGUUUGGUCCUGGCCUUAUAAUUAAUUAGAGGUAAAAUUACACAUGCAAACCUCCAUAGACCGGUGUAAAAUCCCUUAAACAUUUACUUAAAAUUUAAGGAGAGGGUAUCAAGCACAUUAAAAUAGCUUAAGACACCUUGCCUAGCCACACCCCCACGGGACUCAGCAGUGAUAAAUAUUAAGCAAUAAACGAAAGUUUGACUAAGUUAUACCUCUUAGGGUUGGUAAAUUUCGUGCCAGCCACCGCGGUCAUACGAUUAACCCAAACUAAUUAUCUUCGGCGUAAAACGUGUCAACUAUAAAUAAAUAAAUAGAAUUAAAAUCCAACUUAUAUGUGAAAAUUCAUUGUUAGGACCUAAACUCAAUAACGAAAGUAAUUCUAGUCAUUUAUAAUACACGACAGCUAAGACCCAAACUGGGAUUAGAUACCCCACUAUGCUUAGCCAUAAACCUAAAUAAUUAAAUUUAACAAAACUAUUUGCCAGAGAACUACUAGCCAUAGCUUAAAACUCAAAGGACUUGGCGGUACUUUAUAUCCAUCUAGAGGAGCCUGUUCUAUAAUCGAUAAACCCCGCUCUACCUCACCAUCUCUUGCUAAUUCAGCCUAUAUACCGCCAUCUUCAGCAAACCCUAAAAAGGUAUUAAAGUAAGCAAAAGAAUCAAACAUAAAAACGUUAGGUCAAGGUGUAGCCAAUGAAAUGGGAAGAAAUGGGCUACAUUUUCUUAUAAAAGAACAUUACUAUACCCUUUAUGAAACUAAAGGACUAAGGAGGAUUUAGUAGUAAAUUAAGAAUAGAGAGCUUAAUUGAAUUGAGCAAUGAAGUACGCACACACCGCCCGUCACCCUCCUCAAAUUAAAUUAAACUUAACAUAAUUAAUUUCUAGACAUCCGUUUAUGAGAGGAGAUAAGUCGUAACAAGGUAAGCAUACUGGAAAGUGUGCUUGGAAUAAUC

Proteins
Molecule Chains Sequence Length Organism Sequence
28S ribosomal protein S12, mitochondrial J 139 Mus Musculus MSWPGLLYGLTTSLSRGLALAPQLWAARSMATLNQMHRLGPRKEPPKRLGPTEGRPQLKGVVLRTFIRKPKKPNSANRKCCRVRLSTGKEAVCFIPGEGHTLQEHHVVLVEGGRTQDLPGVKLKVVRGKYDCGHVQKKK
28S ribosomal protein S14, mitochondrial K 128 Mus Musculus MAASVLGSLLRTFRQAVPPSASGQVRGYYVDWRMLRDLKRRKMAYEYADERLRINSLRKNTILPKDLQEMAGDEIAALPRDSCPVRIRNRCVMTSRPRGVKRRWRLSRIVFRHLADHGLLSGVQRAIW
28S ribosomal protein S15, mitochondrial L 258 Mus Musculus MLRAAWRALSSVRAQAVTRAPVPALRGGSSASLLSARCGLQPPSLLRAARAYAAVQKPVQPKQDDEPPSSAFIKEYKDIIPNIEKVDDVVKRILSLEMASRKEKLKIKQEQLMNKIVENPEDSRTLEAQIIALTVRIRNYEEHMQKHRKDKAHKRHLLMSIDRRKKLLKILRQTNYDVFEKTCKELGVEYTLPPLHFQKVHRRFLAKKALCIRVYQEVQKLKKQKRALKAAAAAAKKEKNEGVPENPSNAVPEKTQVN
28S ribosomal protein S16, mitochondrial M 135 Mus Musculus MVQLTTIFCKAYHGGHLTIRLALGGCTNRPFYRIVAAHNKCPRDGRFVEQLGSYDPLPNSHGEKLVALNLDRIRHWIGCGAHLSKPMEKLLGLSGFFPLHPMMITNAERLRRRRAREVLLASQKAESEAKETEAS
28S ribosomal protein S17, mitochondrial N 120 Mus Musculus MSIVRSSVHAKWVVGKVIGTAMIKTAKVRATRLVLDPYLLKYFNKRKTYFAHDALQQCSVGDIVLLRALPVPRSKHVKHELAEIIFKVGRVIDPVTGKPCAGTAYLESPLSEPREELKVS
28S ribosomal protein S18b, mitochondrial O 254 Mus Musculus MAAPLRHTLLKLVPTLLRSSYVAQVPLQTLCTRGPPEEDAPSSLPVSPYESEPWKYLDSEEYHNRYGSRPVWADYRRNHKGGVPPQRTRKTCIRNNKVAGNPCPICRDHKLHVDFRNVKLLEQFVCAHTGIIFHAPYTGVCMKQHKKLTQAIQKARECGLLSYYVPQVEPRDADFGTVHGAVSVTPPAPTLLSGEPWYPWYSWQQPPERELSRLRRLYQGNLLEESGPPPESMPEMPTTPPAESSIEQPGSQSA
28S ribosomal protein S18c, mitochondrial P 143 Mus Musculus MAALVALCSGIGRKNLTTAAGCFTDRGTQAVSVIWRRCFSQFEQVTSNEDLPVPMENPYKEPLKKCVLCEKRVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQREITKAIKRAQKMGFMPVTYKDPAYLKDPRVCNIRYRE
28S ribosomal protein S21, mitochondrial Q 86 Mus Musculus AKHLKFIARTVMVQEGNVEGAYRTLNRILTTDGLTEVISRRRYYEKPCRRRQRESYETCRRIYNMEMARKINFLMRKNRADPWLGC
28S ribosomal protein S22, mitochondrial R 359 Mus Musculus MAAVRTPLSLWRFQLGSRRARRVCTRATAQRHPDALLATRPQPFEVGQPRRLLSSEAESGSSEVKKPAFMDEEVQRILTKITGLDLQKTFRPAIQPLKPPTYKLMTQAQLEEATRLAVEAAKVRLKMPPVLEERKPINDVLAEDKILEGTETNKYVFTDISYNIPHRERFIVVREPSGTLRKASWEERDRVIQIYFPKEGRRVLPPVIFKDENLKTMYSQDRHADVLNLCVAQFEPDSAEYIKVHHQTYEDIDRHGKYELLRSTRHFGGMAWYFVNKKKIDGLLIDQIQRDLVDDATSLVQLYHMLHPDGQSAQEAKEQAAEGVDLIKVFAKTEAQRGAYIELALQTYQEIVTSHSAAS
28S ribosomal protein S23, mitochondrial S 177 Mus Musculus MAGSRLETVGSVFSRTRDLMRAGVLKEKPLWYDIYKAFPPLREPVFRRPRLRYGKAKADIQDIFYQEDQIRAKFFATYGSGQKAFDLFNPNFKSTCQRFVEKYTELQNLGETDEEKLFVETGKALLAEGIILRRVREARTVSVRLQASSEGHEPQEDDDLAQRGQVKQEPETAPSPP
28S ribosomal protein S2, mitochondrial B 291 Mus Musculus MAPAPAVLTRLLCAGVRRWPGFLQKAIPGPAEQNGRKVTGAPVPAVSEPQDGDDFQSRILDTPLQHSDFFNVKELFSVKSLFEARVHLGHKAGCRHRFMEPYIFGNRLGQDIIDLDQTALNLQLALNFTAHVAYRKGIILFVSRNRQFSHLIETTAQACGEYAHTRYFKGGLLTNAQLLFGPSVRLPDLIIFLHTLNNVFEPHVAVRDAAKMNIPTVGIVDTNCNPCLITYPIPGNDDSPQAIQLFCKLFRTTINRAKEKRRQMEALHRLQSPKGSEGSGTSPVPDKSHSP
28S ribosomal protein S25, mitochondrial T 171 Mus Musculus MPMKGRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQIMMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRFHPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGKYKAALKAST
28S ribosomal protein S26, mitochondrial U 200 Mus Musculus MLRALNRLAARPETRPPTPLLLPVRGRKTRHDPPAKSKVGRVQTPPAVDPAEFFVLTERYRQYRETVRALRLEFTLEVRRKLHEARAGVLAERKAQQAITEHRELMAWNRDENRRMQELRIARLQLEAQAQEVQKAEAQAQRAQEEQAWVQLKEQEVLKLQEEAKNFITRENLEARIEEALDSPKSYNWAVTKEGQVVRN
28S ribosomal protein S27, mitochondrial V 415 Mus Musculus MAAPMVRCGMLLARRLDASRLCLAGKRCLLSAAYVDSHQWEAREKEEYHLADLASLMDKAYERKLPVSSLSISRFVDNIASREDLDSAEYYLYKFRHSPNCWYLRDWTIHSWIRQCLKYGAQDKALYTLVNKVQYGIFPDNFTFNLLMDYFIKKGNYKDALSVVFEIMMQEAFDVPSTQFLSLYVLYRCLAEKTELTWEEERDFGASLLLSGLKQRNTVGLSSQLYGYALLGKVELQRGVRAVYHGMPLMWTPGYLDRALQVMERVASSPEDLKLGREVLDVLDGVLKVVTSPDVQTSEAQPQEGEDGLGSANLVEQLDTEEPEQSKLPRYLERFQASRSKLQELNRVESESLLTLTTQLVKEKLPACEAEDLATYEQKLREWHLERVQLIQREQEQREKAKQEYQALSAAEKAA
28S ribosomal protein S28, mitochondrial W 186 Mus Musculus MAALCRSHAGTAGSRFLRALVFSKPLRNASTESGSESATHDSSAPRARSGGFASALERHSDLQRKAELRLESPKPVESFASMLRHSPLTQLGPAKDKLVIGRIFHIVEDDLYIDFGGKFHCVCKRPDVDGEKYQRGTRVRLRLLDLELTSRFLGGTTDTTILEADAVLLGLQEIRDSKSREEQPSK
28S ribosomal protein S29, mitochondrial X 391 Mus Musculus MLTGITRLFSRVQKLDPRCFLHMSVQATQNSQVPAERPRTVSRTSDSDPAKHGEQHEGQHYSIPLQDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLGYLKNTNFAHPAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRFDQPLEASTWLKNFKTTNERFLSQIKVQEKYVWNKRESTEKGSPLGEVVEQGLTRVRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTLIAPEELSLVHNLRKMVKNDWHGGAIVLSLSQTGSLFKSRTAYLPHELLGKEGFNALEPFLPILIPNYNPKEFESSFQYYLENNWLQHEKASTEEGRKELRFLSNCNPEQLERLCASL
28S ribosomal protein S31, mitochondrial Y 384 Mus Musculus MLHRIPAFLRPRPFSGLPLSCGNRDVSVAVLPAAQSGAVRTENNIQRHFCTSRSICSKKVDQSVPANEISQKAAESQGRGKETLKKDLLDIIKDMKVDLSTANVKTPKPRGRKPSASLEATVDRLQKAPEDPPKKRNEFLSPELVAAASAVADSLPFDKQTTKSELLRQLQQHEEELRAQKDREKRRISFTHIISNMKIAKSPSGRASTRPQHQIQFDEDMDSSLKQEKPTDFRKRKYLFKGKRLSIFADKAFADEPPEPEASPSLWEIEFAKQLASVADQPFENGFEEMIQWTKEGKLWEFPVNNEAGLDDDGSEFHEHIFLDKYLEDFPKQGPIRLFMELVTCGLSKNPYLSVKQKVEHIEWFRNYFNEKRDILKENNIAFT
28S ribosomal protein S33, mitochondrial Z 106 Mus Musculus MSPLSEYALRMSRLSARIFGEVARSTDSKSMKVVSLFSEQPLAKKKETYDWYPNHNTYFALMGNLRFLGLYRDEHQDFKDEQRRLKKLRGKGKPRKGEGKRATKKK
28S ribosomal protein S34, mitochondrial 0 218 Mus Musculus MARKKVRPRLIAELARRVRALREQRNQPRDSQLYALDYETLTRPHSGRRLPVRAWADVRRESRLLQLLARLPLFGLGRLVTRKSWLWQHDEPCYWRLTRVRPDYTAQNLDHGRAWGILTFKGKSEDTAREIEQVMYHDWRLVPKHEEEAFTAFTAKPEDRLNSVPYPPLLRAMILAERQKNGDTSVQEPLLNLERTRMRPWDYPAKQETKGRAKGTPV
28S ribosomal protein S35, mitochondrial 1 320 Mus Musculus MAAAALQLRQSLCPGPRVLRTFSSVASPAAPRAGPRTASRSERPMRRKALPPRTEKMDTDQDWPSVYPTAAPFKPSAVPLPVRMGYPVKKGVPMAKEGNLELLKIPNFLHLTPVAIKRHCAALKDFCTEWPAALDSDEKCEEHFPVEIDTADYVSSGPSIRNPKARAVTLRVKLSSLNLDNHAKKKLIKLVGERYCKATDVLTITTDRCPLKRQNYDYAVYLLTVLYHESWKTEDWENSKTEEDMDEYVWAKSSSENSVLQTLLQMRAAESSVAPSREELLGTKEVEDYQKCVVRLKNEGENEASLAQYKESVKRLLNLA
Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 2 117 Mus Musculus ATPSLRGRLARFANPGKPILKPNKPLILANRVGNRRREKGEATCITEMSMMMACWKQNEFRDEACRKEIQDFFDCSSRAQEARKMRSIQESLGQSESLSPHKMTKLLQRFPNKSHLI
28S ribosomal protein S24, mitochondrial C 167 Mus Musculus MAWSASVRGLGQRVLACSRELPGAWRTLHTSAVCAKNRAARVRVAKGNKPVSYEEAHAPHYIAHRKGWLSLHTGNLDGEDHAAERTLEDVFLRKFMMGTFPGCLADQIVLKRRANQVDICALVLRQLPAHKFYFLVGYSETLLSHFYKCPVRLHLQTVPSKVVYKYI
Aurora kinase A-interacting protein 3 200 Mus Musculus MFLARLTSRLARTVVPWAGFSRSCPGSGVIGSYAFRPLYSLQPASPSRAASLPGKRTQSELEEFLVPRKMAISPLESWLTAQYLLPRRNVEVPVTLAPSQFYECPPRQGEEEAQQGVREAWDATPVQCKNVLKIRRRKMNHHKYRKLVKRTRFLRRKVREGRLKKKQIKFEKDLKRIWLKAGLKEAPENWQTPKIYLKNK
Pentatricopeptide repeat domain-containing protein 3, mitochondrial 4 685 Mus Musculus MAAAAVAARRLSFRSGLVLLQTTRGTGVCEPKVCCRFYAGTESLPKVEGSDITGIEEIVIPKKKTWDKVAVLQALASTVNRDPTAAPYVFHDDPYLIPTSALESRSFLLAKKSGETAAKFIINSYPKYFQKDIAEPHIPCLMPEYFEPQIEDVSEAALEERIRLRKVRASVDMFDQLLQAGTTVSLETTNSLLDLLCYYGDQEPPADYPFQQTEHLENLEEAAEENNQTSKMESGPWKAQNNAERIFALMPEKNARSYCTMIRGMVKHRAYAQALNVYTELLNNRLSADVYTFNALIEAKTFILNEKFEEKWNDILDLLKHMVAQKVKPNLQTFNTILKGLRKCYSLGRIPALQILREMKHIGIEPSLATYHHIIHLFYPRDLSAIKMPSLIIYDIMNELEGRTFSPQDLDDGRFFQLAMSVCSSLRDLELAYQVHRLLNTGDNRKLVGHDPLRKVYYSKFFSLICSLEQIDVTLKWYKDLIPSVFLPHYQIFIGLLQALDVANRLELVPQIWKDSKEYSHTFRDALREEVLMLMARDKHPPELQVAFADCAADIKSTYEDQSARQPAFDWPANPLQYIAVLFLRGGRSQEAWKMLELFKKHKKIPRNELLEEFMDTAKASGSTALAIEVVKLASAFSLPIGESLAQRVVMDFTVDPEQKEALGNLTELNSSDGESSSDSDSDDK
28S ribosomal protein S5, mitochondrial D 432 Mus Musculus MAAAVRAAGCLPALCSLQAGHFLSRQLSLNAFPVAATSFLAVKTALSHGSLSSRETRRNHCLTSLSHVLQTQCCVSSPGNWTGQQCRPYSFFTKLTAEELWKGALAETGAGARKGRGKRTKKKKRKDLNRGQIIGEGRSGFLWPGLNVPLIKSGVVQNIGQRSKEEQQKVEATMVEQREEWDRKRKIKVKRERGWSGNTWGGVSIGPPDPGPNGETYEDFDTRILEVRNVFNMTAKEGRKKSVRVLVAVGNGNGAAGFAIGKAADRGDAFRKAKNRAIHYLHYIERYEGHTIFHDISLRFKRTQIRMKKQPRGYGLRCHRAIITICRLIGIKDMYARVTGSMNMLNLTRGLFHGLARQETHQHLADKKGLHVVEFREECGPLPIVVASPHGALSKEPEPEPEVPDTKLDWQDVKAMQGLKRSVWFNLKRPAT
28S ribosomal protein S6, mitochondrial E 125 Mus Musculus MPRYELALILKAMRRPETAAALKRTIESLMDRGAIVRNLESLGERALPYRISSHSQQHSRGGYFLVDFYAPTSAVENILEHLARDIDVVRPNIVKHPLTQEVKECDGIVPVPLEEKLYSTKRRKK
28S ribosomal protein S7, mitochondrial F 242 Mus Musculus MAAPALRAPLRWSGLALGVRCAVWNLPGLTQVRGSRYAPEFREPLIDKEYYRKPVAELTEEEKYDQELKKTQFIKAAAATETSSVFADPVISKFTNMMMKGGNKVLARSLMAQTLEAVKRKQFEKYRAASAEEQATIERNPYRIFHEALKNCEPVIGLVPILKGGHFYQVPVPLADRRRRFLAMKWMITECRENKPRRTLMPEKLSHELLEAFHNRGPVIKRKHNMHKMAEANRALAHYRWW
28S ribosomal protein S9, mitochondrial G 390 Mus Musculus MAAPCVSCGRVLSLWFTPAVRASLCQRPGYWTASAVGWQTGTRFQLSKLIHTTVVTTKKNVQASRQESYTEDFIKKQIEEFNIGKRHLANMMGEDPETFAEEDIDRAIAYLFPSGLFEKRARPMMKHPEHIFPKQRATQWGEDGRPFHFLFYTGKQSYYSLMHDVYGKVMQLEKHRGPLSASAESRDLIGSRWLIKEELEEMLVEKLSDEDYAQFIRLLEKLLTLPCGPAEEEFVQRFRRSVTIQSKKQLIEPVQYDEQGMAFSTSEGRRKSATAQAVVYEHGSGKIHVNGVDYLIYFPITQDREQLMFPFHFLDRLERHDVTCTVSGGGRSAQAGAIRLAMARALCSFVTEDEVEWMRQAGLLTPDPRIRERKKPGQEGARRKFTWKKR
28S ribosomal protein S10, mitochondrial H 160 Mus Musculus MKWVPLSNLHVDVPKDVTRPTITTSDEPDTLYKRLSILVKAHDRAVLDSYEYFAVLAAKELGISIKVHEPPRKIERFTLLKSVHIFKKHRVQYEMRTLYRCLELKHLTGSTASVYLEYIQRNLPEGVAMEVTKTQIQQLPEHIKEPMWETVPEEKKESKS
28S ribosomal protein S11, mitochondrial I 191 Mus Musculus MQVLRNSGSWLLLSWAGHGMTRFVGIAPAKNIHTGAPRLEDSAARQNTEREAAPSRFSLYPPVPGQESSLQWAGMKFEDVPIAHIKATYNNTQIQVVSATNASLARASCGTEGFRNAKKGTGIAAQTAGIAAAAKATGKGVTHIRVVVKGMGPGRWSAIKGLTMGGLEVISITDNTPVPHXGCRPRKARRL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-09-08
Deposition Author(s): Amunts, A. , Itoh, Y. , Khawaja, A. , Laptev, I. , Rorbach, J. , Sergiev, P.