7PKQ
Small subunit of the chlamydomonas reinhardtii mitoribosome
PDB DOI: 10.2210/pdb7pkq/pdb
Classification: RIBOSOME Organism(s): Cupriavidus Necator H16
Deposited: 2021-08-26 Deposition Author(s): Hashem, Y. , Soufari, H. , Waltz, F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 4.2 Å
Small subunit of the chlamydomonas reinhardtii mitoribosome
Hashem, Y. , Soufari, H. , Waltz, F.
Primary Citation of Related Structures: 7PKQ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| uS2m | B | 530 | Cupriavidus Necator H16 | MLTRLAALGRPAVLDAAAAAVVVAVEPSASASAAWRDGGRDASTSYGVHSLPLAWGAQRRALGALASGCASTAPTPMVASAASAAAQARTGLPFSTAASTPAPVNAPPPPVNAPHLSNTPAELEEAELAGLDMESLMRAIVHPLPLGRVRNGALLAQALGTGAPVVQLENGPGGRDAALFFDPAATLSSTMRALHVIRQVLEKDGHVVVVNSNPRMRPLLREAAHLCLNSNVWFWADDWLPGCLAETDARGGHCPLLSDKAQPNRQIMAEKGLVFRNPLVPDRGNPAAVLGGPAPRLSAADMQRLLAGARSPMGLTHSVYKREQTASHRGCRKALAALTAARTAEARLLLPGSQTGAGRGRFRQPALVVVLDLSYGGEAVREAAARNVPTVALLNGHSDASAVTFPVYASESHLGYHHFFLEWLLRVVNIDPKVLHTLRNAARAAPSAGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGARAAHAGAGAGAAAAPAAGSGKAAGKAGQQGGRGKR |
| mS26 | W | 193 | Cupriavidus Necator H16 | MQSGTVQKLLPSAEMLSALLPGLFVAQTRSKTYTSNVMDETRTKRIIDHFAYHKARKQYRASLHNLYSSWRAELVAKQLADPGAQRRLKAEEAREEAARMAELLREKRVATLVEQVRKAELEHKLAQVQLQRAVRRQEELHRREEARAARYQRLLEASRNWIRQEDLEAAINRALDNPEPFGFVTSLKINRGF |
| mS29 | X | 485 | Cupriavidus Necator H16 | MTSALLVASRRARQAQGLPRCLLHAIGIHAGTRAEFASVALQEAGTTPSTSGQEQPSSAQLTPAHLRSYYPLNLALLPEAARGSAGAFYTPRDPGHERRGGCKALQQEMEATGRASILYRPIMAALNGAVAAGQQPRLLLTGPAGCGKSLALLGLVEWARQQGWLVVYVPSCLALVRGGYFARRGRGAAGGWDTLTSAQQLLKGVMDAHGPLLQSLPVLPVPGRAARRQQQQQHEPRQADKPAKVEEGQGQGQGQAGGSGLLEEGSGSASGAGGGGGRTLQDVALRGLSSDDNAQLAVDSALQLIRQLQLLGSGAAQPPDSQPGQPPRVLFALDDYNYLYGPTDYGVQPPSASPLQGRRRVLDAGELILARGLRLLESELGTNPVAAAAAGGGAGGVGGAVVVAATTATPALPAPRSLALEVPHTVVEVPGFDEAETAAALAHYAATGAATRAASAAEARHLFALTGGNGRELRAKAGALGVRVG |
| mS33 | Y | 209 | Cupriavidus Necator H16 | MSASTLSRLLPAGSLAWGLPGVLLRSASLLVHHQPCAPSTSGRVQESQLQWSCYYATSHGTGAPKAASTQSSSTTSAASAAASATSAARPAAVSSEAGGDGASSAPFYAGLAARYPDPDTVPDHVMHRLRNTLFGRAVRPRETTGRRALARPLQGKALTDWYWMPPNESPGFHSEEDEYELRRALNRRHTKEAEAEAADTGADKKKKRK |
| mS34 | Z | 133 | Cupriavidus Necator H16 | MAFVELLRSAPKRTLSDLLRKLPNHGVGAIVTRDTWHPESKKYWEVVEVAPSTADPTKLSAWGYQYFKGERQHPAPKRIASVWKYGWLLKEQPGAGLSAAVLQQLSERQAAAQAAGLVAGGSEAAAGTGAAST |
| mS45-insert | D | 425 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Mitochondrial ribosomal protein S6 | F | 122 | Cupriavidus Necator H16 | MPLYELLMLAKPSLPRAEMVALIKGLGDLVYRNGGFVTSLKSFGDQHLAYDLRRPFEKYDRAHIWQMDFVSSVDAIKPLDHGLHVNNTVLRWVLVKRPMSDKSAAAPAAATQAVEAIAQPQR |
| mS107 | P | 416 | Cupriavidus Necator H16 | MRKRELLNEARALVPEGSGWLEAYTRNISPRQLTWRLGKRDSLAAMTEGWQLYQGKFDTVAMAALLRRLRHAQLQDPGFDPLAAQRLLDDLVPRLRSVGLRFGKLRDITAYLHALAKLRSPAPSASSSAASPRAGAAAASLLTQPDALVLDLAVFATRNRTELLHASPQRLATLLWALMRLLPPQLYGSEQLQVVLDRMALASLGRLQNFAPLDLRWAALAFATFGPHGPSSKATATTTAAAAGTRAAAGAGSGPALPEWPRVVRGEAAAAATAGAQGAEDVTARRQSRNARVIKALCDELAARSGNLALPQPEPRDLALAAHALGLVAAASSSAGGAVAPPALLVKAAGVAARSLPALSGEEAVGLVETLAVWGLRQPALLEALRDAAGRWGEGEQAEALRGRLQAAYTRLGVEL |
| bS18m | R | 356 | Cupriavidus Necator H16 | MPACSGLHAHADQQSSLLQLLAQRKGAYSGRPDINQQSRGFASSAGSDNSSSGQQAAGLESERLAPTTRLQDLVAGATERIAQKQVGTLGQLPEQLAAEAASLEHQLASSSGRSGHTHDLDGAGALADRLASAAAAGGPDGRAGGADGAAVTAGQRLLHNKYGYAALGGVVPDGGEMMAAAGPAAVLRSVTAAQPRLHPRRRFQPGQTYEPQDLNPYSSASPESRQRGVGVAVPRPSVAEVLEKADYKNVAFLTRWFLSPAGRLLPRRQTRLPVAVHKHVSRQVRLARHMGLIAGEARLDKTHVQALREVEAAQLLAGRLVAGAEAGAQQQAAAGAGAGAGAAPRQRYNELLDFGA |
| Ribosomal_S3_C domain-containing protein | C | 490 | Cupriavidus Necator H16 | MDDMVLVLARNLSGKAKGKPAPKGAPAPPPPPVASSAVTANPATRSAGARIRRNQPRLDPLTLLTPQQRELAESLAHLSRQAAQPPSATAAGADALTPAAEAAADAAAEAAAAPLRGLGEVPLPLRRREVAALVDAALTGAAGGQQVHFQPFVFNDIFQSAPAAATYVAEALESGSAWGRIERFFLAAAEADAGKLVAAVRVEVAGRIGRKADMAATKSWAWGDLRLASLTSKLDYGTAAANTRMGVLGIKVWIRYQPAAAPDLYFPATGGSGLHAPLPAGAAPSMSLDELYAAALERSGSSSSSSSSSSVGGAGGSSTRYGAVGWWSRPAGQQPAANRVHEVFTPEFNPKAGDRLDGYLRRAAESRRVFRSAANREEYMATVGRFLVKQRQAAKARAAAEAYAAALSATKPATIPTTSSSSSSSSANSSAASSVPARPRLGRRPHRPLARFPVEAFSPLGRRGPVLLRWRLQAAAAVGKGKGGNGERRA |
| bS1m | A | 253 | Cupriavidus Necator H16 | MRARRSPAINTLDAQLQQADASPASAPSPSSPSSAPLAPSDLDDVLCRHTLRLPKPASTGQEAALRLLSRFNGALPSLRGQTILAKVLSVDSERVTVDTGYNGVAEVPRADVSIAHVHTADGAAPVRPTTSDVRPGDLLRLRVDAPYTPYGDMQLTAVREESEFKRRLAWGELRRAMEAGQPVSGRVLNDCVGGFAVGVAGFVAFLPSAMAARDTTQRVGSLQSFRIVAMDEARRRITLRDAGVAAAGFRRVG |
| S5 DRBM domain-containing protein | E | 368 | Cupriavidus Necator H16 | MLRGSILSAQSTGAFSCGAAAVMPSLRSANSLHGSFAASAAFSSPISTTTSCLDVSQNQERGLSTEATGEGESEDDPTYLRGIKTQSGLRNSDGDEEPPDRRKAYEFEPGGRGRGGGGGGGGAPFQRRPADAAAAGTDMLELVATARELFTRNVDSGSGGGGAGGGGGGGGGVGPLPPLPRELREALYGHRWDRVIVDVRRTHTPVRGRGKREEYTAMVATGNMRGVFGLGIGVAESAQLATARAHLDSLSRLAAVPLYRGHTLYTHVDHTFHRLSIRMMPRPAGWGLRCPDLLYELCGLVGLRDVSIRVRGQRGSRFFVAQCFQEALQKQTTPHDGVEATGMYIREVFRGGPGGRLPCGLRRGVDVM |
| mS106 | O | 516 | Cupriavidus Necator H16 | MDLIGRGGAPSASALGTDALVLLCGPEAQAGISTCSAAAESAASPQSSCSWVGTAQHSSATRAEAAGPSAPCGPAPLLRNLRTPSQSGRLSGAPPTWISAAAASLGNSPRFAASARCSTADVDVSRSGLEDASALGDCVDRWSTPAATVSGIALLHQYHNHHHNHHHIGHSSSSCGSVASSTSSVPGSAAGSPFPPRPSLPSSATNSSRFLMQSQSQQLRSVSFTAATAAPKAAAKGASAKAGSSSSSGAAAPSPAAAALRTPEWARVPGHLHELQDLYRKRQKRMAALRHGAQVELEAREAVAWKTGGRGRAVAAAAKAALDALPLPPPEDGGKAELAAALAADTTFAAAHEALTGLLRRGVVLDAAEHLAPLLRKAGDAGQLASALGVAAANHLSQAARQLGAHSPRHGPLHAVLVQECRRLKAAAPLVTLWESLHEHGLAPEAADAAAAVRAAVELGDGGAAVRLLMLACMYGEAPLAGAAEAGAVLQLLQQGNPDQAAQLRELLPKLGLRGA |
| Unk2 | V | 152 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| uS17m | Q | 220 | Cupriavidus Necator H16 | MGGMEFIGRVVSNRMQKTVVVAVSYVVWVPKYKVYQKRVARHKARDESQASVIGDIVRIRKSRKFSREVSYSVVDTLRKAHVYDPAAAAALVATRDAARAAAAASTGTRAGAAAAGEGQAAQLEGAGFAASGVATSSAGGRSDPWVAEAARRLDASAARLAALRELYEKEVGPGVPLSGAVLAVANSGPGGTGSVRGKAAAAAAGAAEGPGDAKAQQDKQ |
| mS105 | L | 271 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXMATRQRLMRGIAGLLHQQGQQSSCSQLLMTSAAAASASASSVATGPSHQPALLLRAGSALRGVTTSAPTFNGSLSSLLREEVDYERKNYERPAQISGGPPAPFKLTEAPGDTLLTLTRTFGAEEINVDLHVNSQPSPEYDGEDGDEGISVVAFNVSVAKGDRVLLFECESDGNSVNINHVSLEPKEGLGSESMYSGPVFDELDDNLQGQFGKYLEDRGITAELGEYLRFLIYDKEQREYQNWLSEVEAFVGGK |
| uS8m | H | 412 | Cupriavidus Necator H16 | MAAPLLDPLVSKLRQTTATAARAAEVMRAAFPGATHETAGRNTIAVQLPRKDVPTYVMANQRPQPWELLPMKAAAMTQYPNFFNNSCTFFGSIKRDVVNGVPFCLLRPSRLALDMAKVVRNLGIVDGFEVVQRRSRLGAHDFVWLPEQQPQEPEHLYDTSLFRQRLIRLHLRTDLFSRLPGAPGSGAGGPQPASAQLAPAVGLLPLSVKNISKASQPVLMYPRQLEEAAARLPAGVFMCYHPQLGLITDAMAQQYDVPALVAAHVGLPLSQAAAIRGALRVKAAEEAGKELRHVTQLKDWNMMELLRQRMVERRAALEAGMGVGGEVAARLQELREAGLRLRDEASDRVTSALNVAQDLEDGALAWQLVHSRALGAAPGAAAAGVDEGAGGEEQAGAGEGRTSPRGQPRRRR |
| mS31/46 | K | 186 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| Ribosomal_S10 domain-containing protein | J | 612 | Cupriavidus Necator H16 | MQPVVLRGISSLTWQHARGALPSALQQALAASAASSSSSLTAVDCDAGADMQASCSGRGVECARHRLAWGPLSGVAGLSTSARAASPAAAAMPSSSAASAASPAADAAPPGAYSVEIAVQGFEKRYVDMACNTLGDIIILAFAPKSYAALPTGAPSPSDAPVNLAFGPERRDVRLPWRRTRITLIRGPHIDKTGMEQFERREYKSVLTAATNCPQELARLLEAVKLYQFTGVQIKMQLASAQRVDLPADVSALLRGGGGATAASTGSSSSSSSSSSSSSSLVGSPVVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIPAPASADLAFAEEVGRVLGVLRPAVWAGLSRRRAVLAGSADHETWLKAAAGGLPPSASATRGAGRGGGAAALPPPAVVAGWDAEAEVAGAAAEGGDAFGRLLRLRLRQQAQLQDAQASTSASGTSTPAAASAAAYGLDPALAARLLARIDADLLHAHEAAAAGLPPPAALAAGTAAAAVAAPPPATAVLDASKMSPAEYAYAVLKYVQYVDSLYESSGAAAAAARGDAALQLAAPALAVRLLQLWWEATTVEFKRALGLPPAEEERRMLERLLELQKKKDELKGAGRGGGR |
| mS105 | M | 271 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXMATRQRLMRGIAGLLHQQGQQSSCSQLLMTSAAAASASASSVATGPSHQPALLLRAGSALRGVTTSAPTFNGSLSSLLREEVDYERKNYERPAQISGGPPAPFKLTEAPGDTLLTLTRTFGAEEINVDLHVNSQPSPEYDGEDGDEGISVVAFNVSVAKGDRVLLFECESDGNSVNINHVSLEPKEGLGSESMYSGPVFDELDDNLQGQFGKYLEDRGITAELGEYLRFLIYDKEQREYQNWLSEVEAFVGGK |
| mS105 | N | 271 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXMATRQRLMRGIAGLLHQQGQQSSCSQLLMTSAAAASASASSVATGPSHQPALLLRAGSALRGVTTSAPTFNGSLSSLLREEVDYERKNYERPAQISGGPPAPFKLTEAPGDTLLTLTRTFGAEEINVDLHVNSQPSPEYDGEDGDEGISVVAFNVSVAKGDRVLLFECESDGNSVNINHVSLEPKEGLGSESMYSGPVFDELDDNLQGQFGKYLEDRGITAELGEYLRFLIYDKEQREYQNWLSEVEAFVGGK |
| Unk1 | U | 33 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX |
| uS19m | S | 116 | Cupriavidus Necator H16 | MPRSTWKGPYVAVSLLQEVVALARKHPNWWNKGRYIGQKAPEVINTYSRASVILPDFIACRFGVHNGKSFVGMEVQEAMVGHRLGEFAPTKATVQHKAKEVNTQKKKINPKTGKAA |
| uS7m,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein,Ribosomal_S7 domain-containing protein | G | 324 | Cupriavidus Necator H16 | XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMLSSARRLLATVAEQRALAKADAPAAAAQLRARAGLASVSCCGSTTATITTRLGATGSWRHMSSAADSTSSSSSSSSSQQQQPPAQQQQQPEASTSSAAASSPDGPMSEVVQQLTKASPTGRLLDLFTPSQQQIQTLQRSRGPGRGSRSGTGPAGPAAGTGVQAAEAAAPLTADSDVLEVLMRAVDNCKPLMKVIQSKAGTRVVYQPRPLNPDQSTNFAVKWILQAAQKRRAGAKGVAGAASMAEALAVELLLAAQRKGGARARRDEVHKLALDNRANLRR |
| 30S ribosomal protein S9, chloroplastic | I | 446 | Cupriavidus Necator H16 | MVRGGVATVGPSSLALAASALLGTLPQQTASHSGASLWVFGSRHLAAPAAAGGASNQDRTQPSAKPSAAEPELKLNFSLRPSVLSPLFPAWEQTRQINQRREHLMALLDAHQQLAEGLRITKDGVAASTDGADAGTTSSFAAGGVRAGVTRSARRRARNLQQVASQLRALLDATPGHPRGVTGLPTACPSPAHAVAYCGALEAALASPDAASTGARDFGAVARGDVSPWTHYAKHFAGRYAGAPQLQPLEVIYSRPDPAEVVRQLRRAAREQEALGISSSGGGSGEAGSGLAFPATSTSPEPAGPHIDLTGVTHARGKRKASAASVQLVPAGGAGITVNGVPLSSYFRDPACREKVLAPLALAGAETAYDVAARVKGGGMMGQAQAIATALARALCVQQPSLGATAGDGGNGEGPLAAMTRWDGRVVERQKPGQAGSRRGFQWVKR |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| S1 rRNA | 1 | 101 | NA | AAAUUAGAGUUUGGUGCUGGCUCAGCUUUCAUGCGCCGAGCGGUGGUUUAUACACAUGCGAGCUUAAAAGAUUAAGGCCACGAGUGCGUAAUACGCGAGUU |
| S4 rRNA | 4 | 415 | NA | AGCUCUUGCAUUGCUGAAUUUUUUUUUUUUUUUUUUUUUUAAAAAAAAAAAAAAUUUUUUUUUUUCAAGUCAUCAUGGGGCUUAUAGAGUGGGCUACAGGCGUAUUACAUUGGACACCCACAAGUUGCCAAAACUGUCCGAAUAUACGGAUUGGAGUAAAAAAAAAAAAUUUUUUAAAAUUUUUUUUUUUUUUUGCUGAAACUAGCCUCCAUGAAGAAGGAAUCGCGAGUAAUCGUAGAUCAUUAGCGCUACGGUGAAGGUAACCUCUAUUGUGCACACAUUGCCCGUCACCUCCGAUAAUAGUAUUGUACAGGAAGAACUAUGGCUACACUUAGUCGCGGCCUGGAACGUAUGCGUGAUAUUAGAGUUGGAGUAAGUCGUAACAGGUUGGGGUAGGGGAACCUGCUCCAGAGUC |
| S2 rRNA | 2 | 213 | NA | UGCUAGGUGACCCAAUACGGGCAUCGGGCAAAACUCGCGUAGGAUUAGCGAGCUGGGUCGCUUUUUUUUUUCAGCGGCCCAUGGCUUAUCCUUAGCCUGUCUUAACGGUACUAGGCCACGGUGGCACUGAAAAGGGGCCACGGUUCUUAUGAACCCAGCAGUGUUGAAUUUUGGACAAUCGCUUGAACGGCGGAUCCAGAUGCUGCUUACAAA |
| S3 rRNA | 3 | 393 | NA | AUUGUUUGAACACCCCCCAAGCACGUGCCAGAAGGGUCGGUAAAACGUGCGGUGUCAGUAUAAAGCGUCUUGACUAGGCAGGCAGCGCGUCUGAGCGUGUGAACACUUUAAACGUUGGGUAAUAUUCGGAGGAUCGGUCAAAUGAGAAUAUUCCGGAUGGAAAGCCGAAGGCGAAAGCACCAACAUCAGAGUCACUAAAGCUUCAACGCGUAAGUUUGGGUAGCGAACCGGAUUAGAGACCCGGGUAGUCCAAACCGUCAACACAUUAUAGUAAUCUAUAACGCCUGGUGAUACGGUGGCAACACUAUAAAUCAAAGCAAUUGGCAGCGAUAGAGAUGCGCGGUGGAAUAUGCUGUUUAAAUCGAAUUUACGCGCAAAAUCUUACCACUUUUU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-08-26 Deposition Author(s): Hashem, Y. , Soufari, H. , Waltz, F.