PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7PBE

Emergence of immune escape at dominant sars-cov-2 killer t-cell epitope

PDB DOI: 10.2210/pdb7pbe/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2021-08-02
Deposition Author(s): Fuller, A. , Rizkallah, P.J. , Sewell, A.K. , Wall, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3 Å

Literature

Emergence of immune escape at dominant sars-cov-2 killer t-cell epitope

Fuller, A. , Rizkallah, P.J. , Sewell, A.K. , Wall, A.

Primary Citation of Related Structures: 7PBE


Proteins
Molecule Chains Sequence Length Organism Sequence
MHC class I antigen A 276 Homo Sapiens , Synthetic Construct GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
MHC class I antigen F 276 Homo Sapiens , Synthetic Construct GSHSMRYFFTSVSRPGRGEPRFIAVGYVDDTQFVRFDSDAASQRMEPRAPWIEQEGPEYWDGETRKVKAHSQTHRVDLGTLRGYYNQSEAGSHTVQRMYGCDVGSDWRFLRGYHQYAYDGKDYIALKEDLRSWTAADMAAQTTKHKWEAAHVAEQLRAYLEGTCVEWLRRYLENGKETLQRTDAPKTHMTHHAVSDHEATLRCWALSFYPAEITLTWQRDGEDQTQDTELVETRPAGDGTFQKWAAVVVPSGQEQRYTCHVQHEGLPKPLTLRWEP
Beta-2-microglobulin B 100 Homo Sapiens , Synthetic Construct MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Beta-2-microglobulin G 100 Homo Sapiens , Synthetic Construct MIQRTPKIQVYSRHPAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVTLSQPKIVKWDRDM
Spike protein S1 C 9 Homo Sapiens , Synthetic Construct YLQPRTFLL
Spike protein S1 H 9 Homo Sapiens , Synthetic Construct YLQPRTFLL
Human T-cell Receptor YLQ36, alpha chain D 203 Homo Sapiens , Synthetic Construct RKEVEQDPGPFNVPEGATVAFNCTYSNSASQSFFWYRQDCRLEPKLIMSVYSSGNEDGRFTAQLNRASQYISLLIRDSKLSDSATYLCVVNINTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
Human T-cell Receptor YLQ36, alpha chain I 203 Homo Sapiens , Synthetic Construct RKEVEQDPGPFNVPEGATVAFNCTYSNSASQSFFWYRQDCRLEPKLIMSVYSSGNEDGRFTAQLNRASQYISLLIRDSKLSDSATYLCVVNINTDKLIFGTGTRLQVFPNIQNPDPAVYQLRDSKSSDKSVCLFTDFDSQTNVSQSKDSDVYITDKCVLDMRSMDFKSNSAVAWSNKSDFACANAFNNSIIPEDTFFPSPESS
Human T-cell Receptor YLQ36, beta chain E 243 Homo Sapiens , Synthetic Construct DTGVSQDPRHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASSSANSGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
Human T-cell Receptor YLQ36, beta chain J 243 Homo Sapiens , Synthetic Construct DTGVSQDPRHKITKRGQNVTFRCDPISEHNRLYWYRQTLGQGPEFLTYFQNEAQLEKSRLLSDRFSAERPKGSFSTLEIQRTEQGDSAMYLCASSSANSGELFFGEGSRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQDPRNHFRCQVQFYGLSENDEWTQDRAKPVTQIVSAEAWGRAD
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-08-02
Deposition Author(s): Fuller, A. , Rizkallah, P.J. , Sewell, A.K. , Wall, A.