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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7P6Z

Mycoplasma pneumoniae 70s ribosome in untreated cells

PDB DOI: 10.2210/pdb7p6z/pdb

Classification: RIBOSOME
Organism(s): Mycoplasma Pneumoniae M129

Deposited: 2021-07-18
Deposition Author(s): Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

7p6z
Literature

Mycoplasma pneumoniae 70s ribosome in untreated cells

Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.

Primary Citation of Related Structures: 7P6Z


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S ribosomal RNA 3 2907 NA UACAAUAAGUUACUAAGGGCUUAUGGUGGAUGCCUUGGCACUAAUAGGCGAUGAAGGACGUGUUAACCUGCGAUAAGCUUCGGGUAGGUGGUAAGAACCUCAGAUCCGGAGAUUUCCGAAUGGAGCAAUCCGGUAGUUGGAAACAGCUAUCAUUAAUUGAUGAAUAAAUAGUCAAUUAAAGCAAUACGUGGUGAAGUGAAACAUCUCAGUAGCCACAGGAAAAGAAAACGAAUGUGAUUCCGUGUGUAGUGGCGAGCGAAAGCGGAACAGGCCAAACUUAUCAUUAGAUAGGGGUUGUAGGGCUUGCAAUGUGGACUUGAAAACGAUAGAAGAAGCUGUUGGAAAGCAGCGCGCAAAAGGGUGAUAGCCCCGUAUUUGAAAUUGUUUUCAUACCUAGCGAGAUCCCUGAGUAGCUCGGAAAACGUUAUUUUGAGUGAAUCUGCCCAGACCAUUGGGUAAGCCUAAAUACUAAUUAGUGACCGAUAGCGAAACAGUACCGUGAGGGAAAGGUGAAAAGAACCCAGAGAUGGGAGUGAAAUAGAUUCUGAAACCAUAUGCCUACAACGUGUCAGAGCACAUUAAUGUGUGAUGGCGUGCGUUUUGAAGUAUGAGCCGGCGAGUUAUGAUAGCAAGCGUUAGUUAACCAGGAGAUGGGGAGCUGUAGCGAAAGCGAGUUUUAAAAGAGCGUUUGUUUGUUAUUAUAGACCCGAAACGGGUUGAGCUAGUCAUGAGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCGACUCUCGUUGAAACGAUAGCGGAUGACUUGUGAUUAGGGGUGAAAUUCCAAUCGAAAUCCGUGAUAGCUGGUUCUCGUCGAAAUAGCUUUAAGGCUAGCGUGAGAUCACAAAUAAGUGGAGGUAAAGCUACUGAAUGUAUGAUGGCGCCACCUAGGCGUACUGAAUACAAUUAAACUCUGAAUGCCAUUUAUUUUAUUCUCGCAGUCAGACAGUGGGGGAUAAGCUUCAUUGUCAAGAGGGGAAGAGCCCAGAUCAUUAAAUAAGGUCCCCAAAAUAUACUAAGUGGAAAAGGAUGUGAAAGUGCUAAAACAGCAAGGAUGUUGGCUUAGAAGCAGCCAUCGUUUAAAGAGUGCGUAACAGCUCACUUGUCGAGUGUUUUUGCGCCGAAGAUGUAACGGGGCUAAGUAUAUUACCGAAUUUAUGGAUAAGAUUUAUAUCUUGUGGUAGACGAGCGUUGUAUUGGAGUUGAAGUCAAAGCGUGAGCAUUGGUGGAUCCAAUACAAGUGAGAAUGCCGGCAUGAGUAACGCUUGGGAGUGAGAAUCUCCCAAACCGAUUGACUAAGGUUUCCUGGACCAGGGUCGUCCUUCCAGGGUUAGUCUGGACCUAAGCUGAGGCUGAAAAGCGUAGGCGAUGGACAACAGGUUAAUAUUCCUGUACUUACAGUUAGACUGAUGGAGUGACAAAGAAGGUUUUCCACCCCCAUAAUUGGAUUUGGGGAUAAAUCAUAAGGUGGUACAAUAGGCAAAUCCGUUGUGCAUAACAUUGAGUGAUGAUGUCGAGUGAAUGAGUGAUCAAGUAGCGAAGGUGGUAUUAAUCAUGCUUUCAAGAAAAGCUUCUAGGGUUAAUCUAGCUGUAACCAGUACCGAGAACGAACACACGUAGUCAAGGAGAGGAUCCUAAGGUUAGCGAGUGAACUAUAGCCAAGGAACUCUGCAAAUUAACCCCGUAAGUUAGCGAGAAGGGGUGCUUAUGUAAAAGUAAGCCGCAGUGAAGAACGAGGGGGGACUGUUUAACUAAAACACAACUCUAUGCCAAACCGUAAGGUGAUGUAUAUGGGGUGACACCUGCCCAGUGCUGGAAGGUUAAAGAAGGAGGUUAGCGCAAGCGAAGCUUUUAACUGAAGCCCCAGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUAGUCGGGUAAAUUCCGUCCCGCUUGAAUGGUGUAACCAUCUCUUGACUGUCUCGGCUAUAGACUCGGUGAAAUCCAGGUACGGGUGAAGACACCCGUUAGGCGCAACGGGACGGAAAGACCCCGUGAAGCUUUACUGUAGCUUAAUAUUGAUCAGGACAUUAUCAUGUAGAGAAUAGGUAGGAGCAAUCGAUGCAAGUUCGCUAGGACUUGUUGAUGCGAAAGGUGGAAUACUACCCUUGGUUGUGUGCUGUUCUAAUUGGUAACUGUUAUCCAGUUUCAAGACAGUGUUAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGUACAAAGGUACCUUCAGUACGGUUGGAAAUCGUAUGUAGAGUGUAAUGGUGUAAGGGUGCUUGACUGUGAGACAUACAGGUCGAACAGGUGAGAAAUCAGGUCAUAGUGAUCCGGUGGUCCAGUAUGGAAUGGCCAUCGCUCAACGGAUAAAAGCUACUCCGGGGAUAACAGGCUGAUACUGCCCAAGAGUUCAUAUCGACGGCAGUGUUUGGCACCUCGAUGUCGACUCAUCUCAUCCUCGAGCUGAAGCAGGUUCGAAGGGUUCGGCUGUUCGCCGAUUAAAGAGAUACGUGAGUUGGGUUCAAACCGUCGUGAGACAGGUUGGUCCCUAUCUAUUGUGCCCGUAGGAAGAUUGAAGAGUGUUGCUUCUAGUACGAGAGGACCGAAGCGAGGACACCUCUUAUGCUCCAGUUGUAGCGCCAGCUGCACCGCUGGGUAGUAACGUGUCUAUUAGAUAAACGCUGAAAGCAUCUAAGUGUGAAACUAUCUCAAAGAUUAAUCUUCCCAUUUCGCAAGAAAGUAAGAGCCGUCAAAGACGAUGACGUUGAUAGGUUACAGGUGUAAGCAUAGUGAUAUGUUGAGCUGAGUAAUACUAAUUGCUCGAGGACUUAUUGGA
mRNA y 9 NA UUUUUUUUU
5S ribosomal RNA 4 108 NA UUUGGUGCCCAUGUCGCUGUGGAAACACCUGGUUCCAUUUCGAACCCAGCAGUUAAGCACAGUGGAGCCGAAUGUAGCUGUUUCAGUGAGAAUAGGAAAGCACCAAGC
16S ribosomal RNA 5 1520 NA UUUUUCUGAGAGUUUGAUCCUGGCUCAGGAUUAACGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAUCGAAAGUAGUAAUACUUUAGAGGCGAACGGGUGAGUAACACGUAUCCAAUCUACCUUAUAAUGGGGGAUAACUAGUUGAAAGACUAGCUAAUACCGCAUAAGAACUUUGGUUCGCAUGAAUCAAAGUUGAAAGGACCUGCAAGGGUUCGUUAUUUGAUGAGGGUGCGCCAUAUCAGCUAGUUGGUGGGGUAACGGCCUACCAAGGCAAUGACGUGUAGCUAUGCUGAGAAGUAGAAUAGCCACAAUGGGACUGAGACACGGCCCAUACUCCUACGGGAGGCAGCAGUAGGGAAUUUUUCACAAUGAGCGAAAGCUUGAUGGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUAAGAUUGUAAAGUUCUUUUAUUUGGGAAGAAUGACUUUAGCAGGUAAUGGCUAGAGUUUGACUGUACCAUUUUGAAUAAGUGACGACUAACUAUGUGCCAGCAGUCGCGGUAAUACAUAGGUCGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCAAGCGCAGGCGGAUUGAAAAGUCUGGUGUUAAAGGCAGCUGCUUAACAGUUGUAUGCAUUGGAAACUAUUAAUCUAGAGUGUGGUAGGGAGUUUUGGAAUUUCAUGUGGAGCGGUGAAAUGCGUAGAUAUAUGAAGGAACACCAGUGGCGAAGGCGAAAACUUAGGCCAUUACUGACGCUUAGGCUUGAAAGUGUGGGGAGCAAAUAGGAUUAGAUACCCUAGUAGUCCACACCGUAAACGAUAGAUACUAGCUGUCGGGGCGAUCCCCUCGGUAGUGAAGUUAACACAUUAAGUAUCUCGCCUGGGUAGUACAUUCGCAAGAAUGAAACUCAAACGGAAUUGACGGGGACCCGCACAAGUGGUGGAGCAUGUUGCUUAAUUCGACGGUACACGAAAAACCUUACCUAGACUUGACAUCCUUGGCAAAGUUAUGGAAACAUAAUGGAGGUUAACCGAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCGUUAGUUACAUUGUCUAGCGAGACUGCUAAUGCAAAUUGGAGGAAGGAAGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGUCUAGGGCUGCAAACGUGCUACAAUGGCCAAUACAAACAGUCGCCAGCUUGUAAAAGUGAGCAAAUCUGUAAAGUUGGUCUCAGUUCGGAUUGAGGGCUGCAAUUCGUCCUCAUGAAGUCGGAAUCACUAGUAAUCGCGAAUCAGCUAUGUCGCGGUGAAUACGUUCUCGGGUCUUGUACACACCGCCCGUCAAACUAUGAAAGCUGGUAAUAUUUAAAAACGUGUUGCUAACCAUUAGGAAGCGCAUGUCAAGGAUAGCACCGGUGAUUGGAGUUAAGUCGUAACAAGGUACCCCUACGAGAACGUGGGGGUGGAUCACCUCCUUUCUA
tRNA-Phe 7 76 NA GGUCUUGUAGCUCAGUCGGUAGAGCAACGGUCUGAAGAACCGUGUGUCGGCAGUUCGAUUCUGCCCGAGACCACCA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S18 Q 104 Mycoplasma Pneumoniae M129 MMNNEHDNFQKEVETTTETTFNREEGKRMVRPLFKRSKKYCRFCAIGQLRIDLIDDLEALKRFLSPYAKINPRRITGNCQMHQRHVAKALKRARYLALVPFVKD
50S ribosomal protein L27 U 104 Mycoplasma Pneumoniae M129 MNNKYFLTKIDLQFFASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVGLGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKLDA
50S ribosomal protein L34 0 48 Mycoplasma Pneumoniae M129 MKRTYQPSKLKRAKTHGFLARMATASGRKVLKLRRKKQRAQLTVSSER
50S ribosomal protein L36 2 37 Mycoplasma Pneumoniae M129 MKVRASVKPICKDCKIIKRHQIVRVICKTQKHKQRQG
50S ribosomal protein L35 1 59 Mycoplasma Pneumoniae M129 MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI
30S ribosomal protein S16 O 94 Mycoplasma Pneumoniae M129 MVKIRLMRMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALEWLNKGAKPTDTVRSLFSQTGLWKKFVESKKKPVAKSK
30S ribosomal protein S20 S 87 Mycoplasma Pneumoniae M129 MANIKSNEKRLRQNIKRNLNNKGQKTKLKTNVKNFHKEINLDNLGNVYSQADRLARKGIISTNRARRLKSRNVAVLNKTQVTAVEGK
50S ribosomal protein L28 V 65 Mycoplasma Pneumoniae M129 MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQPCKVKTADGKTTRILVSTRTLRTLKKHNRLS
50S ribosomal protein L31 X 97 Mycoplasma Pneumoniae M129 MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAEKLSGKFNAGKAFLENKTPKKAKGKTEEYTKHRSLNEL
nascent peptide Z 5 Mycoplasma Pneumoniae M129 XXXXX
30S ribosomal protein S5 D 219 Mycoplasma Pneumoniae M129 MTDQNQKANQGNGLQTTNLQAHAQRKHNLRPSSEGIKKAVSKKEGGGHNRNNQNRRFQKPAFKSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAIKKAIKAAHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGIIAGGAIRAIIELAGYSDIYTKNLGRNTPINMIHATMDGILKQLSPRRVAILRNKNLNEL
30S ribosomal protein S3 B 273 Mycoplasma Pneumoniae M129 MGQKVNSNGLRFGINKNWISRWTANSHAQTAKWLIEDEKIRNLFFVNYRNAQVSNVEIERTQATVDVFVYAAQPAFLIGSENKNIQKITKQIKQIIGRTTNLDLTINEIGSPMLSARIIARDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLSTLRADIDYALEKAQTTYGVIGVKVWINRGMIYTKGLNRTPAHILHPQKKQPNRQNQQPRHFNQGQVLSANKLTGSDVETSSIQALTKPNKEDKQ
30S ribosomal protein S13 L 124 Mycoplasma Pneumoniae M129 MARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVASAYKIEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRGQRTRTNARTRKGPRKTVANKKIESK
30S ribosomal protein S17 P 85 Mycoplasma Pneumoniae M129 MKRNQRKVLIGIVKSTKNAKTATVQVESRFKHPLYHKSVVRHKKYQAHNEGEVLAKDGDKVQIVETRPLSATKRFRIAKIIERAK
30S ribosomal protein S11 J 121 Mycoplasma Pneumoniae M129 MAKKKKINVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAGIAADKVAKTVKEMGMATVKLFVKGTGRGKDTAIRSFANAGLSITEINEKTPIPHNGCKPPKRPR
30S ribosomal protein S15 N 86 Mycoplasma Pneumoniae M129 MQIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKRGLYAKVSKRKRLLKYLKHNDLEAYRNLVKTLNLRG
30S ribosomal protein S21 T 60 Mycoplasma Pneumoniae M129 MPKIEVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRRKFRNMV
30S ribosomal protein S19 R 87 Mycoplasma Pneumoniae M129 MSRSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINVYVTDDMVGHKLGEFSPTRNFKQHTANR
50S ribosomal protein L29 W 111 Mycoplasma Pneumoniae M129 MTVAKELRQKSSEELVKLVIKLKGELLEYRFKLAHGELDKPHLINQTRRLLATILTILTERKLNWQEEQAKYKLLTKKTNEAAVNAWKQHLEANKAKLLKSRAKREDASKK
50S ribosomal protein L9 F 149 Mycoplasma Pneumoniae M129 MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSLQDRDLFLKKQQEHYEINKALSHKLKEVIEQTELHFSLKEHNGRPYGSIITKQIINQAHTKGMALQKFMFKDNVRLGFGDHEITLHIFEDTTAVLKVKVTPDNGVK
50S ribosomal protein L2 A 287 Mycoplasma Pneumoniae M129 MPIKKIISRSNSGIHHSTVIDYKKLLTTNKNKPEKSLLVTLKKHGGRNNQGKITVRHQGGRNKRKYRIIDFKRTHYDNIEATVKSIEYDPNRSCFVSLITYANGAKSYIISPDGIKVGDKILASEHPIDIKPGFSMPLAFIPEGTQVHNIELHPKGGGQIARSAGSYARILGQDETGKYVILQLLSGETRKFLKECRATVGVVSNLDHNLVVIGKAGRNRHRGIRPTVRGSAMNPNDHPHGGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKASTNLIIRNRKGEQY
50S ribosomal protein L11 H 137 Mycoplasma Pneumoniae M129 MAKKTITRIAKINLLGGQAKPGPALASVGINMGEFTKQFNEKTKDKQGEMIPCVITAYNDKSFDFILKTTPVSILLKQAAKLEKGAKNAKTIVGKITMAKAKEIAQYKLVDLNANTVEAALKMVLGTAKQMGIEVIE
50S ribosomal protein L4 C 212 Mycoplasma Pneumoniae M129 MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRGGGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKLASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFVVNTLNTNLEQSTSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKALEGKFK
50S ribosomal protein L15 K 151 Mycoplasma Pneumoniae M129 MELNQLKSVPKARNHKTKTLGRGHGSGLGKTSGRGQKGQKARKSGLTRPGFEGGQTPLYRRLPKFGNARKGFLKQEWVVLNLNKIAKLKLDKINRASLIEKQVISAKSQLPIKLIGHTKLEKPLHFEVHKVSKQALKAVENANGSVKLLEK
50S ribosomal protein L17 M 124 Mycoplasma Pneumoniae M129 MSYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITLAKVDNFNNRRQVKKWLLNTNLFDVDQLMDHLFSKVAPKYEKTPGGYSRVLKLGPRRGDATEMAILQLTDAKYK
50S ribosomal protein L13 I 146 Mycoplasma Pneumoniae M129 MQKTSMLTKEQANKRRQWYIVDAAGLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIIINSDQVVLTGNKKENEFWYHHSQYIGGIKKVSGRDMLKKQSDKLVYNAVKGMLPDNRLSRRWITKVHVFKGDKHNMEAQKPTTLNWS
50S ribosomal protein L10 G 161 Mycoplasma Pneumoniae M129 MEAKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILRRALKAGKFEGIDETAIKGKLAVAVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDNRAFNSADLEKIAKLPGRNELYGMFLSVLQAPLRKFLYALEAVKAAK
50S ribosomal protein L6 E 184 Mycoplasma Pneumoniae M129 MSKIGNRTITLDPAKVNLNFQKDHIAVKGPLGQIELKLPPNLPLKFELKDNNLQITRNNELKQSKIFHGTYNALITNAIIGVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKIPKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPYKGKGVLYFDEVIVRKAGKTAEGKK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-07-18
Deposition Author(s): Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.