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7P0W

Crystal structure of a trapped pab-agog/double-standed dna covalent intermediate (dna containing thymine opposite to lesion)

PDB DOI: 10.2210/pdb7p0w/pdb

Classification: HYDROLASE
Organism(s): Pyrococcus Abyssi (Strain Ge5 / Orsay) , Synthetic Construct

Deposited: 2021-06-30
Deposition Author(s): Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.12 Å

7p0w
Literature

Crystal structure of a trapped pab-agog/double-standed dna covalent intermediate (dna containing thymine opposite to lesion)

Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.

Primary Citation of Related Structures: 7P0W


Proteins
Molecule Chains Sequence Length Organism Sequence
N-glycosylase/DNA lyase A 242 Pyrococcus Abyssi (Strain Ge5 / Orsay) , Synthetic Construct GSHMIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQWWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEYYGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKLTKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*TP*(PED)P*TP*TP*TP*CP*T)-3') b 9 NA TTTXTTTCT
DNA (5'-D(*AP*GP*AP*AP*AP*TP*AP*AP*A)-3') i 9 NA AGAAATAAA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-06-30
Deposition Author(s): Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.