7OYG
Dimeric form of sars-cov-2 rna-dependent rna polymerase
PDB DOI: 10.2210/pdb7oyg/pdb
Classification: VIRAL PROTEIN Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct
Deposited: 2021-06-24 Deposition Author(s): Cramer, P. , Dienemann, C. , Hillen, H.S. , Jochheim, F.A. , Kokic, G. , Schmitzova, J. , Tegunov, D.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.5 Å
Dimeric form of sars-cov-2 rna-dependent rna polymerase
Cramer, P. , Dienemann, C. , Hillen, H.S. , Jochheim, F.A. , Kokic, G. , Schmitzova, J. , Tegunov, D.
Primary Citation of Related Structures: 7OYG
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| SARS-CoV-2 RNA-dependent RNA polymerase (nsp12) | A | 935 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNASADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ |
| SARS-CoV-2 RNA-dependent RNA polymerase (nsp12) | D | 935 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNASADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHTVLQ |
| SARS-CoV-2 nsp8 | B | 201 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNAAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ |
| SARS-CoV-2 nsp8 | E | 201 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNAAIASEFSSLPSYAAFATAQEAYEQAVANGDSEVVLKKLKKSLNVAKSEFDRDAAMQRKLEKMADQAMTQMYKQARSEDKRAKVTSAMQTMLFTMLRKLDNDALNNIINNARDGCVPLNIIPLTTAAKLMVVIPDYNTYKNTCDGTTFTYASALWEIQQVVDADSKIVQLSEISMDNSPNLAWPLIVTALRANSAVKLQ |
| SARS-CoV-2 nsp7 | C | 86 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNASKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQ |
| SARS-CoV-2 nsp7 | F | 86 | Severe Acute Respiratory Syndrome Coronavirus 2 , Synthetic Construct | SNASKMSDVKCTSVVLLSVLQQLRVESSSKLWAQCVQLHNDILLAKDTTEAFEKMVSLLSVLLSMQGAVDINKLCEEMLDNRATLQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(P*CP*UP*AP*CP*GP*CP*AP*GP*UP*G)-3') | p | 15 | NA | UGAGCCUACGCAGUG |
| RNA (5'-R(P*CP*UP*AP*CP*GP*CP*AP*GP*UP*G)-3') | g | 15 | NA | UGAGCCUACGCAGUG |
| RNA (5'-R(P*UP*GP*CP*AP*CP*UP*GP*CP*GP*UP*AP*G)-3') | t | 57 | NA | UUUUCAUGCACUGCGUAGGCUCAUACCGUAUUGAGACCUUUUGGUCUCAAUACGGUA |
| RNA (5'-R(P*UP*GP*CP*AP*CP*UP*GP*CP*GP*UP*AP*G)-3') | h | 57 | NA | UUUUCAUGCACUGCGUAGGCUCAUACCGUAUUGAGACCUUUUGGUCUCAAUACGGUA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-06-24 Deposition Author(s): Cramer, P. , Dienemann, C. , Hillen, H.S. , Jochheim, F.A. , Kokic, G. , Schmitzova, J. , Tegunov, D.