PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7OY7

Crystal structure of a trapped pab-agog/double-standed dna covalent intermediate (dna containing cytosine opposite to lesion)

PDB DOI: 10.2210/pdb7oy7/pdb

Classification: HYDROLASE
Organism(s): Pyrococcus Abyssi (Strain Ge5 / Orsay) , Synthetic Construct

Deposited: 2021-06-23
Deposition Author(s): Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.7 Å

Literature

Crystal structure of a trapped pab-agog/double-standed dna covalent intermediate (dna containing cytosine opposite to lesion)

Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.

Primary Citation of Related Structures: 7OY7


Proteins
Molecule Chains Sequence Length Organism Sequence
N-glycosylase/DNA lyase A 242 Pyrococcus Abyssi (Strain Ge5 / Orsay) , Synthetic Construct GSHMIARIIGEIGIEGARFIEENIDEQFKALRYLSKGIDSETFVKLVIANSLVSYQLTGKGEQWWWEFAKYFYGRDVKSIYLAYKEFLPNSRFNRRLIPQKLSRIRRVETFLSTLTEERIEEYYGDMSSLWGSIARALGVDKESKTVVFSVKMFGYAARIVLSTFNPYPMEIPIPEDSRIVKLTKKLTNEKPRKFWMKIARESGVPPLHIDSILWPLLGGASIDSAPPELRDKLAELIKIIR

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*TP*TP*TP*(PED)P*TP*TP*TP*CP*T)-3') b 9 NA TTTXTTTCT
DNA (5'-D(*AP*GP*AP*AP*AP*CP*AP*AP*A)-3') i 9 NA AGAAACAAA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-06-23
Deposition Author(s): Castaing, B. , Coste, F. , Flament, D. , Goffinont, S.