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7OPE

Rqch dr variant bound to 50s-peptidyl-trna-rqcp rqc complex (rigid body refinement)

PDB DOI: 10.2210/pdb7ope/pdb

Classification: RIBOSOME
Organism(s): Bacillus Subtilis Subsp. Subtilis Str. 168

Deposited: 2021-05-31
Deposition Author(s): Crowe-Mcauliffe, C. , Wilson, D.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.2 Å

7ope
Literature

Rqch dr variant bound to 50s-peptidyl-trna-rqcp rqc complex (rigid body refinement)

Crowe-Mcauliffe, C. , Wilson, D.N.

Primary Citation of Related Structures: 7OPE


Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L27 A 94 Bacillus Subtilis Subsp. Subtilis Str. 168 MLRLDLQFFASKKGVGSTKNGRDSEAKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERFGRDRKKVSVYPVAQ
50S ribosomal protein L13 N 145 Bacillus Subtilis Subsp. Subtilis Str. 168 MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG
50S ribosomal protein L14 O 122 Bacillus Subtilis Subsp. Subtilis Str. 168 MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVI
50S ribosomal protein L15 P 146 Bacillus Subtilis Subsp. Subtilis Str. 168 MKLHELKPSEGSRKTRNRVGRGIGSGNGKTAGKGHKGQNARSGGGVRPGFEGGQMPLFQRLPKRGFTNINRKEYAVVNLDKLNGFAEGTEVTPELLLETGVISKLNAGVKILGNGKLEKKLTVKANKFSASAKEAVEAAGGTAEVI
50S ribosomal protein L16 Q 144 Bacillus Subtilis Subsp. Subtilis Str. 168 MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITNRQIEAARIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPGKVLFEISGVSEEVAREALRLASHKLPIKTKFVKREEIGGESNES
50S ribosomal protein L17 R 120 Bacillus Subtilis Subsp. Subtilis Str. 168 MSYRKLGRTSAQRKAMLRDLTTDLIINERIETTETRAKELRSVVEKMITLGKRGDLHARRQAAAYIRNEVANEENNQDALQKLFSDIATRYEERQGGYTRIMKLGPRRGDGAPMAIIELV
50S ribosomal protein L18 S 120 Bacillus Subtilis Subsp. Subtilis Str. 168 MITKTSKNAARLKRHARVRAKLSGTAERPRLNVFRSNKHIYAQIIDDVNGVTLASASTLDKDLNVESTGDTSAATKVGELVAKRAAEKGISDVVFDRGGYLYHGRVKALADAAREAGLKF
50S ribosomal protein L19 T 115 Bacillus Subtilis Subsp. Subtilis Str. 168 MQKLIEDITKEQLRTDLPAFRPGDTLRVHVKVVEGNRERIQIFEGVVIKRRGGGISETFTVRKISYGVGVERTFPVHTPKIAKIEVVRYGKVRRAKLYYLRELRGKAARIKEIRR
50S ribosomal protein L20 U 119 Bacillus Subtilis Subsp. Subtilis Str. 168 MPRVKGGTVTRKRRKKVLKLAKGYFGSKHTLYKVANQQVMKSGNYAFRDRRQKKRDFRKLWITRINAAARMNGLSYSRLMHGLKLSGIEVNRKMLADLAVNDLTAFNQLADAAKAQLNK
50S ribosomal protein L21 V 102 Bacillus Subtilis Subsp. Subtilis Str. 168 MYAIIKTGGKQIKVEEGQTVYIEKLAAEAGETVTFEDVLFVGGDNVKVGNPTVEGATVTAKVEKQGRAKKITVFRYKPKKNVHKKQGHRQPYTKVTIEKINA
50S ribosomal protein L22 W 113 Bacillus Subtilis Subsp. Subtilis Str. 168 MQAKAVARTVRIAPRKARLVMDLIRGKQVGEAVSILNLTPRAASPIIEKVLKSAIANAEHNYEMDANNLVISQAFVDEGPTLKRFRPRAMGRASQINKRTSHITIVVSEKKEG
50S ribosomal protein L28 B 62 Bacillus Subtilis Subsp. Subtilis Str. 168 MARKCVITGKKTTAGNNRSHAMNASKRTWGANLQKVRILVNGKPKKVYVSARALKSGKVERV
50S ribosomal protein L23 X 95 Bacillus Subtilis Subsp. Subtilis Str. 168 MKDPRDVLKRPVITERSADLMTEKKYTFEVDVRANKTEVKDAVESIFGVKVDKVNIMNYKGKSKRVGRYTGMTSRRRKAIVKLTADSKEIEIFEA
50S ribosomal protein L24 Y 103 Bacillus Subtilis Subsp. Subtilis Str. 168 MHVKKGDKVMVISGKDKGKQGTILAAFPKKDRVLVEGVNMVKKHSKPTQANPQGGISNQEAPIHVSNVMPLDPKTGEVTRVGYKVEDGKKVRVAKKSGQVLDK
50S ribosomal protein L29 C 66 Bacillus Subtilis Subsp. Subtilis Str. 168 MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIREVRKAIARMKTVIREREIAANK
50S ribosomal protein L30 D 59 Bacillus Subtilis Subsp. Subtilis Str. 168 MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ
50S ribosomal protein L3 F 209 Bacillus Subtilis Subsp. Subtilis Str. 168 MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK
50S ribosomal protein L4 G 207 Bacillus Subtilis Subsp. Subtilis Str. 168 MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA
50S ribosomal protein L5 H 179 Bacillus Subtilis Subsp. Subtilis Str. 168 MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPFQK
50S ribosomal protein L2 E 277 Bacillus Subtilis Subsp. Subtilis Str. 168 MAIKKYKPTSNGRRGMTTSDFAEITTDKPEKSLLAPLHKKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADGEKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVLGKEGKYVLVRLNSGEVRMILSACRASIGQVGNEQHELINIGKAGRSRWKGIRPTVRGSVMNPNDHPHGGGEGRAPIGRKSPMSPWGKPTLGFKTRKKKNKSDKFIVRRRKNK
50S ribosomal protein L6 I 179 Bacillus Subtilis Subsp. Subtilis Str. 168 MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGKSAK
50S ribosomal protein L36 J 37 Bacillus Subtilis Subsp. Subtilis Str. 168 MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG
Uncharacterized protein YabO 1 86 Bacillus Subtilis Subsp. Subtilis Str. 168 MRLDKFLKVSRLIKRRTLAKEVADQGRISINGNQAKASSDVKPGDELTVRFGQKLVTVQVNELKDTTKKEEAANMYTILKEEKLGE
Rqc2 homolog RqcH 0 599 Bacillus Subtilis Subsp. Subtilis Str. 168 MHMSFDGMFTYGMTHELNEKIMGGRITKIHQPYKHDVIFHIRAKGKNQKLLLSAHPSYSRVHITAQAYENPSEPPMFCMLLRKHIEGGFIEKIEQAGLAAIMIFHIKSRNEIGDETVRKLYVEIMGRHSNIILTDAAENVIIDGLKHLSPSMNSYRTVLPGQDYKLPPAQDKISPLEASEDDILRHLSFQEGRLDKQIVDHFSGVSPLFAKEAVHRAGLANKVTLPKALLALFAEVKEHRFIPNITTVNGKEYFYLLELTHLKGEARRFDSLSELLDRFYFGKAERDRVKQQAQDLERFVVNERKKNANKIKKLEKTLEYSENAKEFQLYGELLTANLYMLKKGDKQAEVINYYDEESPTITIPLNPNKTPSENAQAYFTKYQKAKNSVAVVEEQIRLAQEEIEYFDQLIQQLSSASPRDISEIREELVEGKYLRPKQQKGQKKQKPHNPVLETYESTSGLTILVGKNNRQNEYLTTRVAARDDIWLHTKDIPGSHVVIRSSEPDEQTIMEAATIAAYFSKAKDSSSVPVDYTKIRHVKKPNGAKPGFVTYDSQHTVFVTPDADTVIKLKKSGSGGDYKDHDGDYKDHDIDYKDDDDKG
50S ribosomal protein L11 K 141 Bacillus Subtilis Subsp. Subtilis Str. 168 MAKKVVKVVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNARTADQAGLIIPVEISVYEDRSFTFITKTPPAAVLLKKAAGIESGSGEPNRNKVATVKRDKVREIAETKMPDLNAADVEAAMRMVEGTARSMGIVIED
50S ribosomal protein L10 L 166 Bacillus Subtilis Subsp. Subtilis Str. 168 MSSAIETKKVVVEEIASKLKESKSTIIVDYRGLNVSEVTELRKQLREANVEFKVYKNTMTRRAVEQAELNGLNDFLTGPNAIAFSTEDVVAPAKVLNDFAKNHEALEIKAGVIEGKVSTVEEVKALAELPSREGLLSMLLSVLQAPVRNLALAAKAVAEQKEEQGA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
tRNA-Ala-UGC 2 76 NA GGGGCCUUAGCUCAGCUGGGAGAGCGCCUGCUUUGCACGCAGGAGGUCAGCGGUUCGAUCCCGCUAGGCUCCACCA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-05-31
Deposition Author(s): Crowe-Mcauliffe, C. , Wilson, D.N.