7OOD
Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol-treated cells
PDB DOI: 10.2210/pdb7ood/pdb
Classification: RIBOSOME Organism(s): Thermobia Domestica
Deposited: 2021-05-27 Deposition Author(s): Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.4 Å
Mycoplasma pneumoniae 50s subunit of ribosomes in chloramphenicol-treated cells
Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.
Primary Citation of Related Structures: 7OOD
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23S ribosomal RNA | 3 | 2907 | NA | UACAAUAAGUUACUAAGGGCUUAUGGUGGAUGCCUUGGCACUAAUAGGCGAUGAAGGACGUGUUAACCUGCGAUAAGCUUCGGGUAGGUGGUAAGAACCUCAGAUCCGGAGAUUUCCGAAUGGAGCAAUCCGGUAGUUGGAAACAGCUAUCAUUAAUUGAUGAAUAAAUAGUCAAUUAAAGCAAUACGUGGUGAAGUGAAACAUCUCAGUAGCCACAGGAAAAGAAAACGAAUGUGAUUCCGUGUGUAGUGGCGAGCGAAAGCGGAACAGGCCAAACUUAUCAUUAGAUAGGGGUUGUAGGGCUUGCAAUGUGGACUUGAAAACGAUAGAAGAAGCUGUUGGAAAGCAGCGCGCAAAAGGGUGAUAGCCCCGUAUUUGAAAUUGUUUUCAUACCUAGCGAGAUCCCUGAGUAGCUCGGAAAACGUUAUUUUGAGUGAAUCUGCCCAGACCAUUGGGUAAGCCUAAAUACUAAUUAGUGACCGAUAGCGAAACAGUACCGUGAGGGAAAGGUGAAAAGAACCCAGAGAUGGGAGUGAAAUAGAUUCUGAAACCAUAUGCCUACAACGUGUCAGAGCACAUUAAUGUGUGAUGGCGUGCGUUUUGAAGUAUGAGCCGGCGAGUUAUGAUAGCAAGCGUUAGUUAACCAGGAGAUGGGGAGCUGUAGCGAAAGCGAGUUUUAAAAGAGCGUUUGUUUGUUAUUAUAGACCCGAAACGGGUUGAGCUAGUCAUGAGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCGACUCUCGUUGAAACGAUAGCGGAUGACUUGUGAUUAGGGGUGAAAUUCCAAUCGAAAUCCGUGAUAGCUGGUUCUCGUCGAAAUAGCUUUAAGGCUAGCGUGAGAUCACAAAUAAGUGGAGGUAAAGCUACUGAAUGUAUGAUGGCGCCACCUAGGCGUACUGAAUACAAUUAAACUCUGAAUGCCAUUUAUUUUAUUCUCGCAGUCAGACAGUGGGGGAUAAGCUUCAUUGUCAAGAGGGGAAGAGCCCAGAUCAUUAAAUAAGGUCCCCAAAAUAUACUAAGUGGAAAAGGAUGUGAAAGUGCUAAAACAGCAAGGAUGUUGGCUUAGAAGCAGCCAUCGUUUAAAGAGUGCGUAACAGCUCACUUGUCGAGUGUUUUUGCGCCGAAGAUGUAACGGGGCUAAGUAUAUUACCGAAUUUAUGGAUAAGAUUUAUAUCUUGUGGUAGACGAGCGUUGUAUUGGAGUUGAAGUCAAAGCGUGAGCAUUGGUGGAUCCAAUACAAGUGAGAAUGCCGGCAUGAGUAACGCUUGGGAGUGAGAAUCUCCCAAACCGAUUGACUAAGGUUUCCUGGACCAGGGUCGUCCUUCCAGGGUUAGUCUGGACCUAAGCUGAGGCUGAAAAGCGUAGGCGAUGGACAACAGGUUAAUAUUCCUGUACUUACAGUUAGACUGAUGGAGUGACAAAGAAGGUUUUCCACCCCCAUAAUUGGAUUUGGGGAUAAAUCAUAAGGUGGUACAAUAGGCAAAUCCGUUGUGCAUAACAUUGAGUGAUGAUGUCGAGUGAAUGAGUGAUCAAGUAGCGAAGGUGGUAUUAAUCAUGCUUUCAAGAAAAGCUUCUAGGGUUAAUCUAGCUGUAACCAGUACCGAGAACGAACACACGUAGUCAAGGAGAGGAUCCUAAGGUUAGCGAGUGAACUAUAGCCAAGGAACUCUGCAAAUUAACCCCGUAAGUUAGCGAGAAGGGGUGCUUAUGUAAAAGUAAGCCGCAGUGAAGAACGAGGGGGGACUGUUUAACUAAAACACAACUCUAUGCCAAACCGUAAGGUGAUGUAUAUGGGGUGACACCUGCCCAGUGCUGGAAGGUUAAAGAAGGAGGUUAGCGCAAGCGAAGCUUUUAACUGAAGCCCCAGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUAGUCGGGUAAAUUCCGUCCCGCUUGAAUGGUGUAACCAUCUCUUGACUGUCUCGGCUAUAGACUCGGUGAAAUCCAGGUACGGGUGAAGACACCCGUUAGGCGCAACGGGACGGAAAGACCCCGUGAAGCUUUACUGUAGCUUAAUAUUGAUCAGGACAUUAUCAUGUAGAGAAUAGGUAGGAGCAAUCGAUGCAAGUUCGCUAGGACUUGUUGAUGCGAAAGGUGGAAUACUACCCUUGGUUGUGUGCUGUUCUAAUUGGUAACUGUUAUCCAGUUUCAAGACAGUGUUAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGUACAAAGGUACCUUCAGUACGGUUGGAAAUCGUAUGUAGAGUGUAAUGGUGUAAGGGUGCUUGACUGUGAGACAUACAGGUCGAACAGGUGAGAAAUCAGGUCAUAGUGAUCCGGUGGUCCAGUAUGGAAUGGCCAUCGCUCAACGGAUAAAAGCUACUCCGGGGAUAACAGGCUGAUACUGCCCAAGAGUUCAUAUCGACGGCAGUGUUUGGCACCUCGAUGUCGACUCAUCUCAUCCUCGAGCUGAAGCAGGUUCGAAGGGUUCGGCUGUUCGCCGAUUAAAGAGAUACGUGAGUUGGGUUCAAACCGUCGUGAGACAGGUUGGUCCCUAUCUAUUGUGCCCGUAGGAAGAUUGAAGAGUGUUGCUUCUAGUACGAGAGGACCGAAGCGAGGACACCUCUUAUGCUCCAGUUGUAGCGCCAGCUGCACCGCUGGGUAGUAACGUGUCUAUUAGAUAAACGCUGAAAGCAUCUAAGUGUGAAACUAUCUCAAAGAUUAAUCUUCCCAUUUCGCAAGAAAGUAAGAGCCGUCAAAGACGAUGACGUUGAUAGGUUACAGGUGUAAGCAUAGUGAUAUGUUGAGCUGAGUAAUACUAAUUGCUCGAGGACUUAUUGGA |
| 5S ribosomal RNA | 4 | 108 | NA | UUUGGUGCCCAUGUCGCUGUGGAAACACCUGGUUCCAUUUCGAACCCAGCAGUUAAGCACAGUGGAGCCGAAUGUAGCUGUUUCAGUGAGAAUAGGAAAGCACCAAGC |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L21 | Q | 100 | Thermobia Domestica | MHAIVVCGSKQYLVHENDTFFVEKLEAPVGKEIQLDKVLMLDEKIGAPYLEKARVVCVVEKHGLQRKVNVIKHISQKHHLKKYGHRQPYTKLKVVRFVHD |
| 50S ribosomal protein L27 | U | 104 | Thermobia Domestica | MNNKYFLTKIDLQFFASKKGVGSTKNGRDSHAKRLGAKKADGQMIRTGQIIYRQRGTRVYPGVNVGLGSDDTLFALSDGLVKYQKFGPKQGKTRVSVVKHKLDA |
| 50S ribosomal protein L32 | Y | 57 | Thermobia Domestica | MAVQQRRSSKHRRDKRRSHDALTAQALSVCQKCGKKKLFHRVCSCGMYGDLRVKKAY |
| 50S ribosomal protein L34 | 0 | 48 | Thermobia Domestica | MKRTYQPSKLKRAKTHGFLARMATASGRKVLKLRRKKQRAQLTVSSER |
| 50S ribosomal protein L36 | 2 | 37 | Thermobia Domestica | MKVRASVKPICKDCKIIKRHQIVRVICKTQKHKQRQG |
| 50S ribosomal protein L35 | 1 | 59 | Thermobia Domestica | MKVKSAAKKRFKLTKSGQIKRKHAYTSHLAPHKTTKQKRHLRKQGTVSASDFKRIGNLI |
| 50S ribosomal protein L19 | O | 119 | Thermobia Domestica | MKKINKQALIDLVEQKQLKAYVPEFSAGDEVNVAIKLKEKEKVRIQNFTGTVLRRRGKGISETFIVRKTTDGIPIEKNFQIHNPNISIELKRRGKVRRAYISYMRERSGKAAKIKERKQ |
| 50S ribosomal protein L23 | S | 237 | Thermobia Domestica | MDVTNVLLKPVLTEKVYFNQMGETKKYVFVVNPKASKTRVKLAFELVYGIKPLKVNTLIRKPTTIRGGSRFPGLSKLEKLAVITLPKGIAISVTGEAPEKTDKPADKTTLKESTVKEIKDTKNSPEAVVKTAVEALQIKPTAAPVTTAPLQTVAVKVAKEVKEVKVEKPVKVEKPTKPAKVAKEAKTTKVAKETKAEKSVQTTKVAKETKTEKSAKTTKTTATKTTKTKTTKKEVKK |
| 50S ribosomal protein L28 | V | 65 | Thermobia Domestica | MAKKDQLTLRGPLYGNNRSHSKTITRRKWNVNLQPCKVKTADGKTTRILVSTRTLRTLKKHNRLS |
| 50S ribosomal protein L31 | X | 97 | Thermobia Domestica | MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAEKLSGKFNAGKAFLENKTPKKAKGKTEEYTKHRSLNEL |
| 50S ribosomal protein L33 1 | Z | 53 | Thermobia Domestica | MAVKRSTRLGCNDCREINYLTFKNVKKNPEKLALNKFCSRCRKVVVHKEVKRK |
| 50S ribosomal protein L5 | D | 180 | Thermobia Domestica | MNNLKAHYQKTIAKELQKSFAFSSIMQVPRLEKIVINMGVGDAIRDSKFLESALNELHLISGQKPVATKAKNAISTYKLRAGQLIGCKVTLRGERMWAFLEKLIYVALPRVRDFRGLSLKSFDGRGNYTIGIKEQIIFPEIVYDDIKRIRGFDVTLVTSTNKDSEALALLRALNLPLVKG |
| 50S ribosomal protein L3 | B | 287 | Thermobia Domestica | MEIRGIFGVKVGMSQVFTTNNERLPITVIYCEPNQVAGVKTEAKDKYSATLLSFDTVENKKLNKPQQGFFEKNNLKPTKHLQEIRNMTGFEMGQQITPQNLFQVGEYVDVSAISKGRGFTGAIKRWNFKIGPLGHGAGYPHRFQGSVQAGRGGASAQRVFKGKKMSGHYGHEKVTVQNLRIVGFDEANMLVLVSGAIAGPEGGVVLIRTAKKKPGVVKPIELAVQTEKAPEAKPAKLSKKKQAKELAKAQAANQQTVEAKVDTPVVEPKPTEVKKAAPVVEKKGEDK |
| 50S ribosomal protein L16 | L | 139 | Thermobia Domestica | MLQPKRTKYRKPHNVSYEGKAKGNSYVAFGEYGLVATKGNWIDARAIESARIAISKCLGKTGKMWIRIFPHMSKTKKPLEVRMGSGKGNPEFWVAVVKQGTVMFEVANIPESQMIKALTRAGHKLPVTWKILKREEVSA |
| 50S ribosomal protein L20 | P | 127 | Thermobia Domestica | MRIKGGKQTRVRRKKWLKQASGSFGTRHASYKVAKQTVIQAAKYAYRDRRNKKRDFRSLWILRLNAALREQGMTYSVFINLLKKHNIEINRKVLSELAIKEPSKFNLIVQKVKSEQPKAAKPAALGN |
| 50S ribosomal protein L14 | J | 122 | Thermobia Domestica | MVSFMTRLNVADNTGAKQVGIIKVLGSTRKRYAFLGDVVVVSVKDAIPSGMVKKGQVLRAVIVRTKKGQQRKDGTHLKFDDNACVLIKEDKSPRGTRIFGPVARELRERGYNKILSLAVEVV |
| 50S ribosomal protein L18 | N | 116 | Thermobia Domestica | MKTRTEQRRLRHKRIVKKIRATNHDNRVVLMVIKSLNHISVQAWDFSQNIVLASSSSLALKLKNGNKDNAKLVGQDIADKLVKLKLTNVVFDTGGSKYHGRIAALAEAARERGLNF |
| 50S ribosomal protein L24 | T | 111 | Thermobia Domestica | MQRIKKGDKVVVITGKNKGGSGIVLKIMPARQQAIVEGLNKVTRHKKKDQTTKRAAKQSTGKVQQEAPIFLSKLALFDQKAKQQTIGKIKYVMDPKTNKKTRVFKKSNNTL |
| 50S ribosomal protein L22 | R | 159 | Thermobia Domestica | MIAFAKQFRVRISPQKARLVCQLIVGKKTADAQNILSNTPKKAATLIAKLLNSAIANATNNHGMNGDALYVFECVANQGPSMKRTIPRAKGSSNMITKRSSNLVVKLSDNPNERQELIKQQKALVKKRVEGQQKAKMARQKAVTSVVKAPSKTQGGVQK |
| 50S ribosomal protein L9 | F | 149 | Thermobia Domestica | MKVILKQDVSNLGKRFDVVDVKDGYAIHFLFPKKLAAPLTKKSLQDRDLFLKKQQEHYEINKALSHKLKEVIEQTELHFSLKEHNGRPYGSIITKQIINQAHTKGMALQKFMFKDNVRLGFGDHEITLHIFEDTTAVLKVKVTPDNGVK |
| 50S ribosomal protein L29 | W | 111 | Thermobia Domestica | MTVAKELRQKSSEELVKLVIKLKGELLEYRFKLAHGELDKPHLINQTRRLLATILTILTERKLNWQEEQAKYKLLTKKTNEAAVNAWKQHLEANKAKLLKSRAKREDASKK |
| 50S ribosomal protein L11 | H | 137 | Thermobia Domestica | MAKKTITRIAKINLLGGQAKPGPALASVGINMGEFTKQFNEKTKDKQGEMIPCVITAYNDKSFDFILKTTPVSILLKQAAKLEKGAKNAKTIVGKITMAKAKEIAQYKLVDLNANTVEAALKMVLGTAKQMGIEVIE |
| 50S ribosomal protein L10 | G | 161 | Thermobia Domestica | MEAKKDKAQQVADVSHLLSTSAGFVIFDYTSMSAIEATSIRKKLFKNGSKIKVIKNNILRRALKAGKFEGIDETAIKGKLAVAVGVNEIVETLKAVDGVVKAKEAMNFVCGYFDNRAFNSADLEKIAKLPGRNELYGMFLSVLQAPLRKFLYALEAVKAAK |
| 50S ribosomal protein L2 | A | 287 | Thermobia Domestica | MPIKKIISRSNSGIHHSTVIDYKKLLTTNKNKPEKSLLVTLKKHGGRNNQGKITVRHQGGRNKRKYRIIDFKRTHYDNIEATVKSIEYDPNRSCFVSLITYANGAKSYIISPDGIKVGDKILASEHPIDIKPGFSMPLAFIPEGTQVHNIELHPKGGGQIARSAGSYARILGQDETGKYVILQLLSGETRKFLKECRATVGVVSNLDHNLVVIGKAGRNRHRGIRPTVRGSAMNPNDHPHGGGEGRSPVGRDAPRTPWGKRHMGVKTRNMKKASTNLIIRNRKGEQY |
| 50S ribosomal protein L4 | C | 212 | Thermobia Domestica | MAKLKLIKIDGSFETEPVKLSPGLIAKELKQQPVFDAVLVEQASWRQGTHSILTKGEVRGGGKKPYKQKHTGKARQGSTRNPHFVGGGIVFGPKPNRNYSLKLNKKAHTAALHTVWSEKLASDNTHLVDQNLFNKTEGKTKVMMQFLKSAKLLDKNVLFVVNTLNTNLEQSTSNIKNVQVKHLDKVSVRDLMLANALLVEKEVLKALEGKFK |
| 50S ribosomal protein L6 | E | 184 | Thermobia Domestica | MSKIGNRTITLDPAKVNLNFQKDHIAVKGPLGQIELKLPPNLPLKFELKDNNLQITRNNELKQSKIFHGTYNALITNAIIGVTQGFEKKLRLVGVGYRANVEGETLNLQLGYSHPIKEKIPKGLTVKVEKNTEITISGISKELVGQFATEVRKWRKPEPYKGKGVLYFDEVIVRKAGKTAEGKK |
| 50S ribosomal protein L15 | K | 151 | Thermobia Domestica | MELNQLKSVPKARNHKTKTLGRGHGSGLGKTSGRGQKGQKARKSGLTRPGFEGGQTPLYRRLPKFGNARKGFLKQEWVVLNLNKIAKLKLDKINRASLIEKQVISAKSQLPIKLIGHTKLEKPLHFEVHKVSKQALKAVENANGSVKLLEK |
| 50S ribosomal protein L13 | I | 146 | Thermobia Domestica | MQKTSMLTKEQANKRRQWYIVDAAGLVLGKLAVKAADLIRGKNKVDFTPNQDCGDYLIIINSDQVVLTGNKKENEFWYHHSQYIGGIKKVSGRDMLKKQSDKLVYNAVKGMLPDNRLSRRWITKVHVFKGDKHNMEAQKPTTLNWS |
| 50S ribosomal protein L17 | M | 124 | Thermobia Domestica | MSYINKPGKTSAWRVMTVRQQVSAVLAYGKIETTLKKAKNTQKRLDKLITLAKVDNFNNRRQVKKWLLNTNLFDVDQLMDHLFSKVAPKYEKTPGGYSRVLKLGPRRGDATEMAILQLTDAKYK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-05-27 Deposition Author(s): Lenz, S. , Mahamid, J. , Rappsilber, J. , Xue, L.