PDBi (Protein Data Bank in India)

All in One Protein Databank
Home About Help Resources External Links Contact Us
Advanced Search
FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7OM7

Thosea asigna virus rdrp domain in complex with rna and nucleotide umpnpp

PDB DOI: 10.2210/pdb7om7/pdb

Classification: VIRAL PROTEIN
Organism(s): Synthetic Construct , Thosea Asigna Virus

Deposited: 2021-05-21
Deposition Author(s): Falqui, M. , Ferrero, D.S. , Verdaguer, N.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.4 Å

7om7
Literature

Thosea asigna virus rdrp domain in complex with rna and nucleotide umpnpp

Falqui, M. , Ferrero, D.S. , Verdaguer, N.

Primary Citation of Related Structures: 7OM7


Proteins
Molecule Chains Sequence Length Organism Sequence
RNA-dependent RNA polymerase A 684 Synthetic Construct , Thosea Asigna Virus MGSSHHHHHHSQDLENLYFQGGSTRLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQARSVTSELKSAVKEAQGLEHQTLDFLEQLGEYPVCGILHGDHPVHPSGTHNNNGKVSVKRQFAAGVNTSDALTCAFRFEDSDLVRETALKTTYTDGTWAGFVQRLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAIASAGPPYWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAECKNKTDRYEVESLGEKTRPYFSHPFHLSALVSVLSQSFSGALKIMTEDSTSFNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRKDGKLYRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVEMATQSPFLIDGTKVYRKMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLMFGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNEDPGFGELWTEQKFLGLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSKYRSKETETMRERTLFDRARGLLVTGAVFDERARGLMGAVINSTAPEVVCMRVQEGGGRGAPPAYAFLTRDGVFEFPISDGYPSYDWVVSLYSRDHPCDMPRVFPEAATLIASYRKQVMDTRVVI
RNA-dependent RNA polymerase B 684 Synthetic Construct , Thosea Asigna Virus MGSSHHHHHHSQDLENLYFQGGSTRLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQARSVTSELKSAVKEAQGLEHQTLDFLEQLGEYPVCGILHGDHPVHPSGTHNNNGKVSVKRQFAAGVNTSDALTCAFRFEDSDLVRETALKTTYTDGTWAGFVQRLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAIASAGPPYWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAECKNKTDRYEVESLGEKTRPYFSHPFHLSALVSVLSQSFSGALKIMTEDSTSFNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRKDGKLYRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVEMATQSPFLIDGTKVYRKMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLMFGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNEDPGFGELWTEQKFLGLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSKYRSKETETMRERTLFDRARGLLVTGAVFDERARGLMGAVINSTAPEVVCMRVQEGGGRGAPPAYAFLTRDGVFEFPISDGYPSYDWVVSLYSRDHPCDMPRVFPEAATLIASYRKQVMDTRVVI
RNA-dependent RNA polymerase C 684 Synthetic Construct , Thosea Asigna Virus MGSSHHHHHHSQDLENLYFQGGSTRLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQARSVTSELKSAVKEAQGLEHQTLDFLEQLGEYPVCGILHGDHPVHPSGTHNNNGKVSVKRQFAAGVNTSDALTCAFRFEDSDLVRETALKTTYTDGTWAGFVQRLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAIASAGPPYWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAECKNKTDRYEVESLGEKTRPYFSHPFHLSALVSVLSQSFSGALKIMTEDSTSFNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRKDGKLYRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVEMATQSPFLIDGTKVYRKMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLMFGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNEDPGFGELWTEQKFLGLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSKYRSKETETMRERTLFDRARGLLVTGAVFDERARGLMGAVINSTAPEVVCMRVQEGGGRGAPPAYAFLTRDGVFEFPISDGYPSYDWVVSLYSRDHPCDMPRVFPEAATLIASYRKQVMDTRVVI
RNA-dependent RNA polymerase D 684 Synthetic Construct , Thosea Asigna Virus MGSSHHHHHHSQDLENLYFQGGSTRLSLEAMLAERAMVARQDLAGLKRKLAGADRVLAPQSPEQCGRESAQAQARSVTSELKSAVKEAQGLEHQTLDFLEQLGEYPVCGILHGDHPVHPSGTHNNNGKVSVKRQFAAGVNTSDALTCAFRFEDSDLVRETALKTTYTDGTWAGFVQRLKMQTTRKCVQEKVSRKLLKQLFPYDPQKLVDVSGELSELVLGIKTNAIASAGPPYWRTKRDALPDMLDCVLPLLYDHIVRKDLTTLRNKHPELFLAECKNKTDRYEVESLGEKTRPYFSHPFHLSALVSVLSQSFSGALKIMTEDSTSFNAYGFSWTNGGAEDLAIWARQAGEAGKKPPRIACYGDDTDIYYRKDGKLYRICPDFKQMDGSVDATTIEAVVDYVVDAHVKQYPTARQFWEEVGKLWVEMATQSPFLIDGTKVYRKMQKDGLMTGVVGTTLFDTVKSALAYNDWADQLMFGSLNLLEEKYAIEFFKNKHGLVIKEGTWKPALVNEDPGFGELWTEQKFLGLQLKVVRRENEKVYVPNLPFEDWLTMWVTPRSKYRSKETETMRERTLFDRARGLLVTGAVFDERARGLMGAVINSTAPEVVCMRVQEGGGRGAPPAYAFLTRDGVFEFPISDGYPSYDWVVSLYSRDHPCDMPRVFPEAATLIASYRKQVMDTRVVI

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') e 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') f 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') g 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') h 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') i 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') j 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') k 8 NA CAAAAUUU
RNA (5'-R(P*AP*AP*AP*UP*UP*U)-3') l 8 NA CAAAAUUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-05-21
Deposition Author(s): Falqui, M. , Ferrero, D.S. , Verdaguer, N.