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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7OBQ

Srp-sr at the distal site conformation

PDB DOI: 10.2210/pdb7obq/pdb

Classification: RNA BINDING PROTEIN
Organism(s): Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae

Deposited: 2021-04-23
Deposition Author(s): Ban, N. , Jomaa, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.9 Å

7obq
Literature

Srp-sr at the distal site conformation

Ban, N. , Jomaa, A.

Primary Citation of Related Structures: 7OBQ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
SRP RNA 1 249 NA GCCGGGCGCGGUGGCGCGCGCCUGUAGUCCCAGCUACUCGGGAGGCUGAGGCAGGAGGAUCGCUUCGCUAUGCCGAUCGGGUGUCCGCACUAAGUUCGGCAUCAAUAUGGUGACCUCCCGGGAGCGGGGGACCACCAGGUUGCCUAAGGAGGGGUGAACCGGCCCAGGUCGGAAACGGAGCAGGUCAAAACUCCCGUGCUGAUCAGUAGUGGGAUCGCGCCUGUGAAUAGCAUAGCGAGACCCCGUCUC

Proteins
Molecule Chains Sequence Length Organism Sequence
Signal recognition particle 19 Q 144 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MACAAARSPAEQDRFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWNRDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGGDQSLQQGEGSKKGKGKKKK
EM14S01-3B_G0054400.mRNA.1.CDS.1 S 62 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Signal recognition particle subunit SRP68,Signal recognition particle subunit SRP68 U 622 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MAAEKQVPGGGGGGGGGGGGGGGSGGGRGAGGEENKENERPSAGSKANREFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANTEPRKRFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEHQEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSAINELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAIAQAESEETKERLFESMLSECRDAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQLPGLEEDRAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Signal recognition particle receptor subunit beta V 271 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MASADSRRLGDGDGAGGAFQPYLDSLRQELQQRDPTVLSVVVALLAVLLTLVFWKLVRSRRSSQRAVLLLGLCDSGKTLLFVRLLTGHYRDTQTSITDSSATYRVNNNRGNSLTLIDLPGHESLRLQFLERFKTSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMSLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDPGSADIQDLEKWLAKIA
Signal recognition particle 54 kDa protein X 504 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MVLADLGRKITSALRSLSNATIINEEVLNAMLKEVCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKLVDPGVKAWTPTKGKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEAQAKAFKDKVDVASVIVTKLDGHAKGGGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNELKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDMSKNVSQSQMAKLNQQMAKMMDPRVLHHMGGMAGLQSMMRQFQQGAAGNMKGMMGFNNM
SRP receptor subunit alpha Y 637 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLATSKAVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGLEKSSKSKSEAPKEKGKKAPRVWELGGCANKEVLDYSTPTTNGAPEAALSEDINLIRGTGPGGQLQDLDCSSSDDEGAAQNSTKPSSTKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHPPEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA
Signal recognition particle subunit SRP72 Z 671 Canis Lupus Familiaris , Oryctolagus Cuniculus , Saccharomyces Cerevisiae MASGGSGGVSVPALWSEVNRYGQNGDFTRALKTVNKILQINKDDVTALHCKVVCLIQNGSFKEALNVINTHTKVLANNSLSFEKAYCEYRLNRIENALKTIESANQQTDKLKELYGQVLYRLERYDECLAVYRDLVRNSQDDYDEERKTNLSAVVAAQSNWEKVVPENLGLQEGTHELCYNAACALIGQGQLSQAMKILQKAEDLCRRSLSEDSDGTEEDPQAELAIIHGQMAYILQLQGRTEEALQLYNQIIKLKPTDVGLLAVIANNIITINKDQNVFDSKKKVKLTNAEGVEFKLSKKQLQAIEFNKALLAMYTNQAEQCRKISASLQSQSPEHLLPVLIQAAQLCREKQHTKAIELLQEFSDQHPENAAEIKLTMAQLKISQGNISKACLILRSIEELKHKPGMVSALVTMYSHEEDIDSAIEVFTQAIQWYQNHQPKSSAHLSLIREAANFKLKYGRKKEAISDLEQLWKQNPKDIHTLAQLISAYSLVDPEKAKALSKHLPSSDSMSLKVDVEALENSPGATYIRKKGGKVAGDSQPKEQGQGDLKKKKKKKKGKLPKNYDPKVTPDPERWLPMRERSYYRGRKKGKKKDQIGKGTQGATAGASSELDASKTVSSPPTSPRPGSAATASASTSNIIPPRHQKPAGAPATKKKQQQKKKKGGKGGW
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-04-23
Deposition Author(s): Ban, N. , Jomaa, A.