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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7NHN

Vgal, an antibiotic resistance abcf, in complex with 70s ribosome from listeria monocytogenes

PDB DOI: 10.2210/pdb7nhn/pdb

Classification: RIBOSOME
Organism(s): Listeria Monocytogenes Egd-E

Deposited: 2021-02-10
Deposition Author(s): Crowe-Mcauliffe, C. , Hauryliuk, V. , Turnbull, K.J. , Wilson, D.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

Literature

Vgal, an antibiotic resistance abcf, in complex with 70s ribosome from listeria monocytogenes

Crowe-Mcauliffe, C. , Hauryliuk, V. , Turnbull, K.J. , Wilson, D.N.

Primary Citation of Related Structures: 7NHN


Proteins
Molecule Chains Sequence Length Organism Sequence
Lmo0919 protein 0 567 Listeria Monocytogenes Egd-E MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTTLMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKATQHAMRQNPSVLLADQPTSNLDVESVKHLERQWSDFHGALIIISHDRAFLDALCTEIWEIKNQKIHVYKGNYHAYLEQKQQQENQAELAYKEFKNKKKQLQASQTHHEIEAGRIVKPGKRLNNKEASAFKAGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKIITPDNRVIKKGNTILSAKETAYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYFDQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLLLSMLLLSDANFLILDQPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLLVIENNEMNFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAILEQDYQEIITKRQQFSGGHHHHHHAKGGENLYFQGVADYKDHDGDYKDHDIDYKDDDDKG
30S ribosomal protein S10 K 102 Listeria Monocytogenes Egd-E MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPTEKSIYTVLRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIKL
30S ribosomal protein S12 M 137 Listeria Monocytogenes Egd-E MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK
30S ribosomal protein S13 N 121 Listeria Monocytogenes Egd-E MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTRTRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNTKNNARTRKGPSKTVAGKKK
30S ribosomal protein S14 type Z O 61 Listeria Monocytogenes Egd-E MAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW
30S ribosomal protein S15 P 89 Listeria Monocytogenes Egd-E MALTQERKNEIIAEYRVHDTDTGSPEVQIAVLTAEINSLNEHVRVHKKDHHSYRGLMKMVGHRRNLLTYLRKKDVQRYRELIKRLGLRR
30S ribosomal protein S16 Q 90 Listeria Monocytogenes Egd-E MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLLDPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK
30S ribosomal protein S17 R 87 Listeria Monocytogenes Egd-E MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII
30S ribosomal protein S18 S 79 Listeria Monocytogenes Egd-E MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKILPRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK
30S ribosomal protein S19 T 92 Listeria Monocytogenes Egd-E MGRSLKKGPFVDDHLMKKVEAAAESEKKQVIKTWSRRSTIFPTFVGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR
30S ribosomal protein S20 U 84 Listeria Monocytogenes Egd-E MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNADNAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK
30S ribosomal protein S3 D 218 Listeria Monocytogenes Egd-E MGQKVHPIGMRIGVIRDWDSKWYAEKDYADFLHEDLRIRDYVAKRLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKRVHINIVEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKTQVSGRLGGADIARAEHYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPTKKNNVEGGK
50S ribosomal protein L22 V 118 Listeria Monocytogenes Egd-E MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYTPRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAINKRTSHITVVVSEVKEG
50S ribosomal protein L23 W 94 Listeria Monocytogenes Egd-E MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAVEEIFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIVTVTADSKEIQFFEV
50S ribosomal protein L24 X 103 Listeria Monocytogenes Egd-E MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKHTKPSNVNPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGDKKVRVAKKSGEVIDK
50S ribosomal protein L27 Z 96 Listeria Monocytogenes Egd-E MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSILYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERMGRDKKKVSVYPEVQEA
50S ribosomal protein L28 1 62 Listeria Monocytogenes Egd-E MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKPKKVWVSARALKSGKVERV
50S ribosomal protein L29 2 63 Listeria Monocytogenes Egd-E MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIREVRKAIARMKTIVRERELA
50S ribosomal protein L30 3 59 Listeria Monocytogenes Egd-E MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIRGMITKVSHLVDVKEV
50S ribosomal protein L32-2 5 57 Listeria Monocytogenes Egd-E MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCPECGQYDGKDVANS
50S ribosomal protein L33 1 6 49 Listeria Monocytogenes Egd-E MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTLHRETK
50S ribosomal protein L34 7 44 Listeria Monocytogenes Egd-E MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA
50S ribosomal protein L35 8 66 Listeria Monocytogenes Egd-E MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKLRKSAMVSAGDFKRIRQMVAKMK
50S ribosomal protein L36 9 37 Listeria Monocytogenes Egd-E MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG
30S ribosomal protein S2 C 249 Listeria Monocytogenes Egd-E MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKKVDEAFNFMREVASDNGTILFVGTKKQAQESVRDEAIRSGQYFVNHRWLGGTLTNFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGGIKDMKGLPDALFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMADAIIEVNQGEELTEAEVAPVEEKATEETTEA
30S ribosomal protein S4 E 200 Listeria Monocytogenes Egd-E MARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKISEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLRGKHGENFMILLEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSFVPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR
30S ribosomal protein S5 F 167 Listeria Monocytogenes Egd-E MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKNGHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASAGSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGKTVEELLG
50S ribosomal protein L2 G 277 Listeria Monocytogenes Egd-E MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRNNQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADGEKRYIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGTSAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRPTVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKKK
50S ribosomal protein L3 H 209 Listeria Monocytogenes Egd-E MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETDGYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVFAEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLLPGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK
50S ribosomal protein L4 I 207 Listeria Monocytogenes Egd-E MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLPKKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGESENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA
50S ribosomal protein L5 J 179 Listeria Monocytogenes Egd-E MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDATANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDKLVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTAKSDEESHELLTQLGMPFQK
30S ribosomal protein S11 L 129 Listeria Monocytogenes Egd-E MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAWSSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQAAGLEVTAIKDVTPVPHNGCRPPKRRRV
50S ribosomal protein L31 type B 4 81 Listeria Monocytogenes Egd-E MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYPLLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGLK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
5S rRNA b 114 NA CUGGUAGUUAUGGCGAGAAGGUCACACCCGUUCCCAUCCCGAACACGGUAGUUAAGCUUCUCUGCGCCAAUGGUAGUUGGGGGCUUCCCCCUGCGAGAGUAGGUCGCUGCCGGG
16S rRNA a 1542 NA GAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAACGAACGGAGGAAGAGCUUGCUCUUCCAAUGUUAGUGGCGGACGGGUGAGUAACACGUGGGCAACCUGCCUGUAAGUUGGGGAUAACUCCGGGAAACCGGGGCUAAUACCGAAUGAUAAAGUGUGGCGCAUGCCACGCUUUUGAAAGAUGGUUUCGGCUAUCGCUUACAGAUGGGCCCGCGGUGCAUUAGCUAGUUGGUAGGGUAAUGGCCUACCAAGGCAACGAUGCAUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGUAUGAAGAAGGUUUUCGGAUCGUAAAGUACUGUUGUUAGAGAAGAACAAGGAUAAGAGUAACUGCUUGUCCCUUGACGGUAUCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAUUUAUUGGGCGUAAAGCGCGCGCAGGCGGUCUUUUAAGUCUGAUGUGAAAGCCCCCGGCUUAACCGGGGAGGGUCAUUGGAAACUGGAAGACUGGAGUGCAGAAGAGGAGAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAUAUGUGGAGGAACACCAGUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGCGCGAAAGCGUGGGGAGCAAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGACCGCAAGGUUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUUUGACCACUCUGGAGACAGAGCUUUCCCUUCGGGGACAAAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGAUUUUAGUUGCCAGCAUUUAGUUGGGCACUCUAAAGUGACUGCCGGUGCAAGCCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGAUAGUACAAAGGGUCGCGAAGCCGCGAGGUGGAGCUAAUCCCAUAAAACUAUUCUCAGUUCGGAUUGUAGGCUGCAACUCGCCUACAUGAAGCCGGAAUCGCUAGUAAUCGUGGAUCAGCAUGCCACGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGUCGGUAGGGUAACCUUUAUGGAGCCAGCCGCCGAAGGUGGGACAGAUAAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-02-10
Deposition Author(s): Crowe-Mcauliffe, C. , Hauryliuk, V. , Turnbull, K.J. , Wilson, D.N.