7NHK
Lsaa, an antibiotic resistance abcf, in complex with 70s ribosome from enterococcus faecalis
PDB DOI: 10.2210/pdb7nhk/pdb
Classification: RIBOSOME Organism(s): Candidatus Kuenenia
Deposited: 2021-02-10 Deposition Author(s): Crowe-Mcauliffe, C. , Hauryliuk, V.H. , Kasari, M. , Wilson, D.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.9 Å
Lsaa, an antibiotic resistance abcf, in complex with 70s ribosome from enterococcus faecalis
Crowe-Mcauliffe, C. , Hauryliuk, V.H. , Kasari, M. , Wilson, D.N.
Primary Citation of Related Structures: 7NHK
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| ABC-F type ribosomal protection protein Lsa(A) | 0 | 541 | Candidatus Kuenenia | MSKIELKQLSFAYDNQEALLFDQANITMDTNWKLGLIGRNGRGKTTLLRLLQKQLDYQGEILHQVDFVYFPQTVAEEQQLTYYVLQEVTSFEQWKLERELTLLNVDPEVLWRPFSSLSGGEKTKVLLGLLFIEENAFPLIDQPTNHLDLAGRQQVAEYLKKKKHGFILVSHDRAFVDEVVDHILAIEKSQLTLYQGNFSIYEEQKKLRDAFELAENEKIKKEVNRLKETARKKAEWSMNREGDKYGNAKEKGSGAIFDTGAIGARAARVMKRSKHIQQRAETQLAEKEKLLKDLEYIDSLSMDYQPTHHKTLLTVEELRLGYEKNWLFAPISFSINAGEIVGITGKNGSGKSSLIQYLLDNFSGDSEGEATLAHQLTISYVRQDYEDNQGTLSEFAEKNQLDYTQFLNNLRKLGMERAVFTNRIEQMSMGQRKKVEVAKSLSQSAELYIWDQPLNYLDVFNHQQLEALILSVKPAMLVIEHDAHFMKKITDKKIVLKSGHHHHHHAKGGENLYFQGVADYKDHDGDYKDHDIDYKDDDDKG |
| 30S ribosomal protein S6 | G | 100 | Candidatus Kuenenia | MSQDTKYEIMYIIRPNIDEEAKTALVERFDTILKDNGAEVIESKDWEKRRLAYEMNGFREGIYHIVNVTSPSTAGAINEFDRLAKINDDIIRHMIVKVEA |
| 30S ribosomal protein S7 | H | 156 | Candidatus Kuenenia | MPRKGPVAKRDVLPDPIYNSKLVTRLINRVMVDGKRGIAANIIYNSFDIIKESTGNDPLEVFEQAMKNVMPVLEVKARRVGGSNYQVPVEVRPERRTTLGLRWVVNYARLRGEHTMEERLAKEIMDAANNTGASVKKREDTHKMADANRAFAHYRW |
| 30S ribosomal protein S8 | I | 132 | Candidatus Kuenenia | MVMTDPIADFLTRIRNANMVKHETLEVPASKIKRDIAEILKREGFIRDVEYIEDDKQGVIRVFLKYGKNEERVITNLKRISKPGLRAYVKADEVPKVLNGLGIAIISTSEGVITDKEARAKNIGGEVIAYVW |
| 30S ribosomal protein S9 | J | 130 | Candidatus Kuenenia | MAQVQYSGTGRRKNAVARVRLVPGTGKITVNKKDVEEYIPHADLREVINQPFGVTETKGAYDVIVNVNGGGYAGQSGAIRHGIARALLQVDPDFRSALKRAGLLTRDARMVERKKPGLKKARKASQFSKR |
| 30S ribosomal protein S10 | K | 102 | Candidatus Kuenenia | MAKQKIRIRLKAYEHRILDQSADKIVETAKRTGADVSGPIPLPTERSLYTVIRATHKYKDSREQFEMRTHKRLIDIVNPTPKTVDALMKLDLPSGVNIEIKL |
| 30S ribosomal protein S12 | M | 137 | Candidatus Kuenenia | MPTINQLVRKPRKSKVEKSDSPALNKGYNSFKKTQTNVNSPQKRGVCTRVGTMTPKKPNSALRKYARVRLSNLIEVTAYIPGIGHNLQEHSVVLLRGGRVKDLPGVRYHIVRGALDTAGVNDRKQSRSKYGTKRPKA |
| 30S ribosomal protein S13 | N | 121 | Candidatus Kuenenia | MARIAGVDIPRDKRVVVSLTYIYGIGNTTAKKVLANVGVSEDVRVRDLTNEQTDAIRAEIDKLKVEGDLRREVNLNIKRLMEIGSYRGIRHRRGLPTRGQNTKNNARTRKGPTKTVAGKKK |
| 30S ribosomal protein S14 type Z | O | 61 | Candidatus Kuenenia | MAKKSMIAKNKRPAKHSTQAYTRCERCGRPHSVYRKFHLCRICFRELAYKGQIPGVKKASW |
| 30S ribosomal protein S15 | P | 89 | Candidatus Kuenenia | MAISQERKNEIIKEYARHEGDTGSPEVQIAVLTEDINQLNEHARTHKKDHHSYRGLMKKIGHRRNLLAYLRKTDIQRYRELIQRLGLRR |
| 50S ribosomal protein L29 | 1 | 62 | Candidatus Kuenenia | MKVKEIRELTTAEMLDKEKQLKEELFNLRFQLATGQLENTARIKEVRQSIARIKTVLREQAN |
| 30S ribosomal protein S16 | Q | 91 | Candidatus Kuenenia | MAVKIRLKRMGSKKSPFYRIVVADSRSPRDGRFIETVGTYNPLKDPAEVVLKEDLVLDWLSKGAQPSDTVRNILSKEGVMKKHHEAKNVKK |
| 30S ribosomal protein S17 | R | 88 | Candidatus Kuenenia | MTEERNQRKVYQGRVVSDKMDKTITVVVETKKNHPIYGKRMKYSKKYKAHDENNTAKVGDIVKIMETRPLSATKRFRLLEVVEEAVII |
| 30S ribosomal protein S18 | S | 79 | Candidatus Kuenenia | MAQQRRGGRKRRKVDYIAANHIEYIDYKDTELLKRFISERGKILPRRVTGTGAKNQRKLTIAIKRARIMGLLPFVSDEQ |
| 30S ribosomal protein S19 | T | 92 | Candidatus Kuenenia | MGRSLKKGPFVDDHLMKKVEAQQGAEKKKVIKTWSRRSTIFPSFVGFTIAVYDGRKHVPVYIQEDMVGHKLGEFAPTRTYRGHVADDKKTKR |
| 30S ribosomal protein S20 | U | 83 | Candidatus Kuenenia | MPNIESAIKRVRTSANANAKNSSQTNAMRTAIKKFEEAVAAGADNVDALYNEAVKAVDMAATKGLIHKNKANRDKIRLSKLAK |
| 50S ribosomal protein L22 | V | 115 | Candidatus Kuenenia | MSEQITSAKATAKTVRTSPRKARLVIDLIRGKSVADAISILKFTPNKSAGIIEKVLMSAVANAENNFDLDVESLVVSEAFVNEGPTMKRFRPRAKGSASPINKRTSHITVVVTEK |
| 50S ribosomal protein L23 | W | 96 | Candidatus Kuenenia | MELLDVIKRPVITEKSMLAMDEKKYTFEVDTRANKTLVKQAVESAFDVKVANVNILNVRPKFKRMGKYAGYTKKRRKAIVTLTEDSKEIQLFEAAE |
| 50S ribosomal protein L24 | X | 103 | Candidatus Kuenenia | MFVKKGDKVKVITGKDKNKEGVVLAAFPKQDKVIVEGVNVVKKHQKPNQAAPQGGILEVEAPIHVSNVMVIDPSNGEATKVAFKEVDGKKVRVSKKTGEVLDK |
| 50S ribosomal protein L27 | Y | 95 | Candidatus Kuenenia | MLLTMNLQLFAHKKGGGSTSNGRDSESKRLGAKSADGQTVTGGSILYRQRGTKIYPGVNVGIGGDDTLFAKVDGVVRFERKGRDKKQVSVYPVAN |
| 50S ribosomal protein L28 | Z | 62 | Candidatus Kuenenia | MAKVCYFTGRKTSSGNNRSHAMNSTKRTVKPNLQKVRVLIDGKPKKVWVSTRALKSGKIERV |
| 50S ribosomal protein L30 | 2 | 59 | Candidatus Kuenenia | MAELKITLKRSVIGRPQNQRATVKALGLGKVNSTVTKPANEAIKGMVNTISHLVDVEEV |
| 30S ribosomal protein S2 | C | 261 | Candidatus Kuenenia | MAVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQKTVKLVDAAYDYMKNVAEEGGVALFVGTKKQAQEAIKDEAIRAGQYYVNHRWLGGTLTNWDTIQKRIARLKKINAMEEDGTFEVLPKKEVAGLNKERERLEKFLGGIADMPRIPDVMYIVDPRKERIAVQEAHKLNIPIVAMVDTNCDPDEIDVVIPSNDDAIRAVKLITAKMADAFIEGNQGEDQATEELFVEETPEATSIEEIVDVVEGNNESAE |
| 30S ribosomal protein S4 | E | 203 | Candidatus Kuenenia | MSRYTGPSWKVSRRLGISLSGTGKELARRPYKPGQHGPNSRGKVSEYGMQLTEKQKLRHMYGMNERQFRTLFIKASKIKEGKHGVNFMVLLEQRLDNVVYRLGLATTRRQARQLVNHGHITVDGKRVDIPSYHVEVGQVIGVREKSQNISTIKEAVEATVGRPAFVSFDTEKLEGSFTRLPERDELYPEIDEALVVEYYNQKL |
| 50S ribosomal protein L1 | F | 229 | Candidatus Kuenenia | MAKKSKKMQEALKKVDATKAYSVEEAVALAKDTNIAKFDATVEVAYKLNVDPKKADQQIRGAVVLPNGTGKTQTVLVFAKGEKAKEAEAAGADFVGDDDMVAKIQGGWFDFDVVVATPDMMATVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVEEVKAGKVTYRVDKAGNIHVPIGKVSFDNEKLVENFNTINDVLLKAKPSTAKGQYIKNISVTTTFGPGIHVDQASF |
| 50S ribosomal protein L32 | 4 | 59 | Candidatus Kuenenia | MAVPARRTSKAKKAKRRTHYKLTIKGLNACSNCGEMKKSHHVCPACGHYDGKDVMSKEA |
| 30S ribosomal protein S11 | L | 129 | Candidatus Kuenenia | MAAKKVSRKRRVKKNIESGVAHIHSTFNNTIVMITDTHGNALAWSSAGSLGFKGSKKSTPFAAQMAAEAATKVAMEHGLKTVDVTVKGPGSGREAAIRSLQATGLEVTAIRDVTPVPHNGCRPPKRRRV |
| 50S ribosomal protein L33 | 5 | 49 | Candidatus Kuenenia | MRVNITLECTSCKERNYLTNKNKRNNPDRLEKQKYCPRERKVTLHRETK |
| 50S ribosomal protein L31 type B | 3 | 89 | Candidatus Kuenenia | MKQDIHPNYQPVVFMDSTTGFKFLSGSTKGSSETVEWEDGNTYPLLRVEVTSDSHPFYTGRQKFTQADGRVDRFNKKYGLKDENANPDA |
| 50S ribosomal protein L34 | 6 | 44 | Candidatus Kuenenia | MKRTYQPNKRKRQKVHGFRKRMSTKNGRRVLASRRRKGRKVISA |
| 50S ribosomal protein L35 | 7 | 66 | Candidatus Kuenenia | MPKQKTHRGLAKRVKRTGGGGLKRGRAFTSHRFHGKTKKQRRQLRKASMVAKGDYKRIRQQLARMK |
| 50S ribosomal protein L36 | 8 | 38 | Candidatus Kuenenia | MKVRPSVKPMCEHCKVIRRKGRVMVICPANPKHKQRQG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*GP*AP*CP*AP*A)-3') | b | 20 | NA | GGAGGUNNNNNNNAUGACAA |
| 23S rRNA | a | 2912 | NA | GGUUAAGUGAAUAAGGGCGCACGGUGGAUGCCUUGGCACUAGGAGCCGAUGAAGGACGGGACUAACACCGAUAUGCUUUGGGGAGCUGUAAGUAAGCUAUGAUCCAGAGAUUUCCGAAUGGGGGAACCCAAUAUCUUUUAUAGGAUAUUACUUUUCAGUGAAUACAUAGCUGAUUAGAGGUAGACGCAGAGAACUGAAACAUCUUAGUACCUGCAGGAAGAGAAAGAAAAUUCGAUUCCCUGAGUAGCGGCGAGCGAAACGGGAAGAGCCCAAACCAACAAGCUUGCUUGUUGGGGUUGUAGGACUCCGAUAUGGUAGUCUGUUAGUAUAGUUGAAGGAUUUGGAAAAUUCCGCUAAAGAGGGUGAAAGCCCCGUAGACGAAAUGCUGACAACACCUAGGAGGAUCCUGAGUACGGCGGAACACGAGAAAUUCCGUCGGAAUCCGCGGGGACCAUCCCGCAAGGCUAAAUACUCCCUAGUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGUGAAAAGCACCCCGGAAGGGGAGUGAAAUAGAUCCUGAAACCGUGUGCCUACAACAAGUCAAAGCUCGUUAAUGAGUGAUGGCGUGCCUUUUGUAGAAUGAACCGGCGAGUUACGAUUGCAUGCGAGGUUAAGUCGAAGAGACGGAGCCGCAGCGAAAGCGAGUCUGAAUAGGGCGAAUGAGUAUGUAGUCGUAGACCCGAAACCAUGUGAUCUACCCAUGUCCAGGUUGAAGGUGCGGUAAAACGCACUGGAGGACCGAACCCACGUACGUUGAAAAGUGCGGGGAUGAGGUGUGGGUAGCGGAGAAAUUCCAAACGAACUUGGAGAUAGCUGGUUCUCUCCGAAAUAGCUUUAGGGCUAGCCUCGGAAUUGAGAAUGAUGGAGGUAGAGCACUGUUUGGACUAGGGGCCCAUCUCGGGUUACCGAAUUCAGAUAAACUCCGAAUGCCAUUCAUUUAUAUCCGGGAGUCAGACUGCGAGUGAUAAGAUCCGUAGUCGAAAGGGAAACAGCCCAGACCACCAGCUAAGGUCCCAAAAUAUAUGUUAAGUGGAAAAGGAUGUGGGGUUGCACAGACAACUAGGAUGUUGGCUUAGAAGCAGCCACCAUUUAAAGAGUGCGUAAUAGCUCACUAGUCGAGUGACCCUGCGCCGAAAAUGUACCGGGGCUAAACAUAUUACCGAAGCUGUGGACUACACCAUUAGGUGUAGUGGUAGGAGAGCGUUCUAAGGGCGUUGAAGGUCGAUCGUGAGGACGGCUGGAGCGCUUAGAAGUGAGAAUGCCGGUAUGAGUAGCGAAAGACAGGUGAGAAUCCUGUCCACCGUAUGACUAAGGUUUCCUGGGGAAGGCUCGUCCGCCCAGGGUUAGUCGGGACCUAAGCCGAGGCCGAUAGGCGUAGGCGAUGGACAACAGGUUGAUAUUCCUGUACCAGUUGUUUUUGUUUGAGCAAUGGAGGGACGCAGUAGGCUAAGGAAUGCAUGCGAUUGGAAGUGCAUGUCCAAGCAAUGAGUCUUGAGUAGAGUUAAAUGCUUUACUCUUUAAGGACAAGUUGUGACGGGGAGCGAAAUAAUAGUAGCGAAGUUCCUGACGUCACACUGCCAAGAAAAGCUUCUAGUGAGAAAACAACUGCCCGUACCGUAAACCGACACAGGUAGUCGAGGAGAGUAUCCUAAGGUGAGCGAGCGAACUCUCGUUAAGGAACUCGGCAAAAUGACCCCGUAACUUCGGGAGAAGGGGUGCUGACUUCGGUCAGCCGCAGUGAAUAGGCCCAAGCGACUGUUUAUCAAAAACACAGGUCUCUGCAAAAUCGUAAGAUGAAGUAUAGGGGCUGACGCCUGCCCGGUGCUGGAAGGUUAAGAGGAUGGGUUAGCUUCGGCGAAGCUCAGAAUUGAAGCCCCAGUAAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCCGCACGAAAGGCGUAACGAUUUGGGCACUGUCUCAACGAGAGACUCGGUGAAAUUUUAGUACCUGUGAAGAUGCAGGUUACCCGCGACAGGACGGAAAGACCCCAUGGAGCUUUACUGUAGUUUGAUAUUGAGUGUUUGUACCACAUGUACAGGAUAGGUAGGAGCCGAUGAGACCGGAACGCUAGUUUCGGAGGAGGCGCUGGUGGGAUACUACCCUUGUGUUAUGAACCCUCUAACCCGCACCACUAAUCGUGGUGGGAGACAGUGUCAGAUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGCCCAAAGGUUCCCUCAGAAUGGUUGGAAAUCAUUCGAAGAGUGUAAAGGCAGAAGGGAGCUUGACUGCGAGACCUACAAGUCGAGCAGGGACGAAAGUCGGGCUUAGUGAUCCGGUGGUUCCGCAUGGAAGGGCCAUCGCUCAACGGAUAAAAGCUACCCUGGGGAUAACAGGCUUAUCUCCCCCAAGAGUCCACAUCGACGGGGAGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGUAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGUCGCGGGCGUUGGAAAUUUGAGAGGAGCUGUCCUUAGUACGAGAGGACCGGGAUGGACUUACCGCUGGUGUACCAGUUGUUCUGCCAAGGGCAUUGCUGGGUAGCUAUGUAGGGAAGGGAUAAACGCUGAAAGCAUCUAAGUGUGAAGCCCACCUCAAGAUGAGAUUUCCCAUUUCUUUAAGAAAGUAAGACCCCUGAGAGAUGAUCAGGUAGAUAGGUUGGAAGUGGAAGGCUAGUGAUAGUUGGAGCGGACCAAUACUAAUCGGUCGAGGACUUAACCA |
| tRNA-fMETi | d | 77 | NA | CGCGGGGUGGAGCAGUCAGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUAGGUUCAAAUCCUGCCCCCGCAACCA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-02-10 Deposition Author(s): Crowe-Mcauliffe, C. , Hauryliuk, V.H. , Kasari, M. , Wilson, D.N.