7NBB
Branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with synthetic nanobody nbsl3
PDB DOI: 10.2210/pdb7nbb/pdb
Classification: SIGNALING PROTEIN Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2021-01-26 Deposition Author(s): Kulathu, Y. , Lange, S.M.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.55 Å
Branched lys48- and lys63-linked tri-ubiquitin (k48-k63-ub3) in complex with synthetic nanobody nbsl3
Primary Citation of Related Structures: 7NBB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Polyubiquitin-B | A | 72 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR |
| Polyubiquitin-B | E | 72 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR |
| Polyubiquitin-B | B | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG |
| Polyubiquitin-B | C | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG |
| Polyubiquitin-B | F | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG |
| Polyubiquitin-B | G | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG |
| Synthetic nanobody NbSL3 | D | 129 | Homo Sapiens , Synthetic Construct | MGQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGRMGWYRQAPGKEREFVAGIDYGGNTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDVVGWIYYLYWGQGTQVTVSSGENLYFQ |
| Synthetic nanobody NbSL3 | H | 129 | Homo Sapiens , Synthetic Construct | MGQVQLQESGGGLVQAGGSLRLSCAASGSIFDLGRMGWYRQAPGKEREFVAGIDYGGNTNYADSVKGRFTISRDNDTVYLQMNSLKPEDTAVYYCAAGIVGDVVGWIYYLYWGQGTQVTVSSGENLYFQ |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2021-01-26 Deposition Author(s): Kulathu, Y. , Lange, S.M.