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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

7MXD

Cryo-em structure of broadly neutralizing v2-apex-targeting antibody j038 in complex with hiv-1 env

PDB DOI: 10.2210/pdb7mxd/pdb

Classification: IMMUNE SYSTEM/VIRAL PROTEIN
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta

Deposited: 2021-05-19
Deposition Author(s): Gao, F. , Zhou, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.4 Å

7mxd
Literature

Cryo-em structure of broadly neutralizing v2-apex-targeting antibody j038 in complex with hiv-1 env

Gao, F. , Zhou, T.

Primary Citation of Related Structures: 7MXD


Proteins
Molecule Chains Sequence Length Organism Sequence
Envelope glycoprotein gp120 A 478 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDADTTLFCASDAKAHETEAHNIWATHACVPTDPNPQEIYMENVTENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLSCTNVTLTNVNYTNNFPNIGNITDEVRNCSFNVTTEIRDKKQKVYALFYKLDIVQMENKNSYRLINCNTSVCKQACPKISFDPIPIHYCTPAGYAILKCNEKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNNTRTSVTIGPGQVFYRTGDIIGDIRKAYCEINGTKWNETLKQVVGKLKEHFPNKTISFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNSTWINSTTIKEYNDTIIYLPCKIKQIINMWQGVGQCMYAPPIRGKINCVSNITGILLTRDGGDANATNDTETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKCKRRVVERRRRRR
Envelope glycoprotein gp120 F 478 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDADTTLFCASDAKAHETEAHNIWATHACVPTDPNPQEIYMENVTENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLSCTNVTLTNVNYTNNFPNIGNITDEVRNCSFNVTTEIRDKKQKVYALFYKLDIVQMENKNSYRLINCNTSVCKQACPKISFDPIPIHYCTPAGYAILKCNEKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNNTRTSVTIGPGQVFYRTGDIIGDIRKAYCEINGTKWNETLKQVVGKLKEHFPNKTISFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNSTWINSTTIKEYNDTIIYLPCKIKQIINMWQGVGQCMYAPPIRGKINCVSNITGILLTRDGGDANATNDTETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKCKRRVVERRRRRR
Envelope glycoprotein gp120 G 478 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AENLWVTVYYGVPVWKDADTTLFCASDAKAHETEAHNIWATHACVPTDPNPQEIYMENVTENFNMWKNNMVEQMQEDIISLWDQSLKPCVKLTPLCVTLSCTNVTLTNVNYTNNFPNIGNITDEVRNCSFNVTTEIRDKKQKVYALFYKLDIVQMENKNSYRLINCNTSVCKQACPKISFDPIPIHYCTPAGYAILKCNEKNFNGTGPCKNVSSVQCTHGIKPVVSTQLLLNGSLAEGEIIIRSENLTNNAKTIIVHLNKSVEINCTRPSNNTRTSVTIGPGQVFYRTGDIIGDIRKAYCEINGTKWNETLKQVVGKLKEHFPNKTISFQPPSGGDLEITMHHFNCRGEFFYCNTTQLFNSTWINSTTIKEYNDTIIYLPCKIKQIINMWQGVGQCMYAPPIRGKINCVSNITGILLTRDGGDANATNDTETFRPGGGNIKDNWRSELYKYKVVQIEPLGIAPTKCKRRVVERRRRRR
3BNC117 antibody heavy chain C 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 antibody heavy chain J 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 antibody heavy chain S 226 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QVQLLQSGAAVTKPGASVRVSCEASGYNIRDYFIHWWRQAPGQGLQWVGWINPKTGQPNNPRQFQGRVSLTRHASWDFDTYSFYMDLKALRSDDTAVYFCARQRSDYWDFDVWGSGTQVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
3BNC117 antibody light chain D 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3BNC117 antibody light chain K 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
3BNC117 antibody light chain U 206 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQMTQSPSSLSASVGDTVTITCQANGYLNWYQQRRGKAPKLLIYDGSKLERGVPSRFSGRRWGQEYNLTINNLQPEDIATYFCQVYEFVVPGTRLDLKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
J038 antibody heavy chain X 228 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta QLHLQESGPGLVRPSETLSLTCDVSGGAFNDAYCSWIRRFPGGGLEWIGRISGRDGYVESNPALTGRVTMSIDATWKKIVLRLTSMTASDTATYFCAGETPEDDFGYYQPYFKTWGQGLGVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTC
J038 antibody light chain Y 214 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta DIQLIQSPSSVSASLGDRVTITCRSTQGIGSDLAWYQATPGTAPKLLIYNSFALHKGVPSRFSGSGSGTEFSLTITGLQPEDFATYYCQHYRRLPLTFGGGTNIEVKRAVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGVLKTGNSQESVTEQDSKDNTYSLSSTLTLSNTDYQSHNVYACEVTHQGLSSPVTKSFNRGEC
Envelope glycoprotein gp41 B 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAMIFGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLPRAPEAQQHLLQLTVWGIKQLQARVLAVERYLEVQKFLGLWGCSGKIICCTAVPWNSTWSNKSFEQIWNNMTWIEWEREISNYTSQIYDILTESQFQQDINEVDLLELD
Envelope glycoprotein gp41 I 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAMIFGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLPRAPEAQQHLLQLTVWGIKQLQARVLAVERYLEVQKFLGLWGCSGKIICCTAVPWNSTWSNKSFEQIWNNMTWIEWEREISNYTSQIYDILTESQFQQDINEVDLLELD
Envelope glycoprotein gp41 H 153 Homo Sapiens , Human Immunodeficiency Virus 1 , Macaca Mulatta AVGIGAMIFGFLGAAGSTMGAASNTLTVQARQLLSGIVQQQSNLPRAPEAQQHLLQLTVWGIKQLQARVLAVERYLEVQKFLGLWGCSGKIICCTAVPWNSTWSNKSFEQIWNNMTWIEWEREISNYTSQIYDILTESQFQQDINEVDLLELD
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2021-05-19
Deposition Author(s): Gao, F. , Zhou, T.