7M4W
A. baumannii ribosome-eravacycline complex: empty 70s
PDB DOI: 10.2210/pdb7m4w/pdb
Classification: RIBOSOME/ANTIBIOTIC Organism(s): Acinetobacter Baumannii (Strain Ab0057)
Deposited: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.55 Å
A. baumannii ribosome-eravacycline complex: empty 70s
Primary Citation of Related Structures: 7M4W
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L33 | 0 | 51 | Acinetobacter Baumannii (Strain Ab0057) | MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIRQHVIFKEAKIK |
| 30S ribosomal protein S6 | F | 127 | Acinetobacter Baumannii (Strain Ab0057) | MRHYEIVLLVHPDQSDQVVGMVERYISQIKEADGQIHRLEDWGRRQLAYPINKIHKAHYILMNVECGQSTLDELEELFRYNDAIIRNLIIRREHAITEESLLAKSAEEKRARKAQREEAQQVAQEAE |
| 30S ribosomal protein S7 | G | 156 | Acinetobacter Baumannii (Strain Ab0057) | MPRRRVVAAREILPDPKFSSQTIAKFMNHVMQDGKKSIAESIVYGALERVQEKNKVDPVEFFETTLEKVRPMVEVKARRVGGATYQVPMEVRPSRRTALAMRWLVDAAAKRSEKTMALRLAGELLDAAEGKGAAIKKREDVHRMAEANKAFSHYRF |
| 30S ribosomal protein S8 | H | 131 | Acinetobacter Baumannii (Strain Ab0057) | MSMQDTVADMLTRVRNAQMAKKQTVSMPSSKLKVAIANVLQQEGYISNVEVAQEETKSTLTITLKYFEGKPVIEMVKRVSRPGLRQYRGKDKLPSVKQGLGIAIVSTSKGIMTDRAARAAGIGGEVIAFVS |
| 30S ribosomal protein S9 | I | 128 | Acinetobacter Baumannii (Strain Ab0057) | MATNYGTGRRKTATARVFLSAGTGKLVINNRTLEQYFGRETARMVVRQPLELLEATEKYDLYITVKGGGIGGQAGAIRHGITRALIAADETLKPVLRQAGFVTRDAREVERKKLGLRKARKRPQFSKR |
| 30S ribosomal protein S10 | J | 103 | Acinetobacter Baumannii (Strain Ab0057) | MSNQRIRIRLKSFDHRLIDQSAQEIVETAKRTGAQVCGPIPMPTRIERFNVLTSPHVNKDARDQYEIRTYKRLIDIVQPTDKTVDALMKLDLAAGVDVQIALG |
| 30S ribosomal protein S11 | K | 128 | Acinetobacter Baumannii (Strain Ab0057) | MAKDTRTRKKVTRTVSEGVAHIHASFNNTIVTITDRQGNALAWATSGGQGFRGSRKSTPFAAQVAAEVAGKAALDYGLKNLDVLVKGPGPGRESAVRALGAVGYKINSITDVTPIPHNGCRPPKKRRV |
| 30S ribosomal protein S12 | L | 124 | Acinetobacter Baumannii (Strain Ab0057) | MATTNQLIRKGRTTLVEKSKVPALKACPQRRGVCTRVYTTTPKKPNSAMRKVCRVRLTSGFEVSSYIGGEGHNLQEHSVVLIRGGRVKDLPGVRYHTVRGSLDCAGVKDRNQSRSKYGAKRPKK |
| 30S ribosomal protein S13 | M | 118 | Acinetobacter Baumannii (Strain Ab0057) | MARIAGVNIPDNKHAVISLTYIFGIGRHTAKNILAAVGITETTKIRELDDAQLDAIRAEVAKVPTEGDLRREISMNIKRLMDLGCYRGLRHRRSLPVRGQRTKTNARTRKGPRKPIKK |
| 30S ribosomal protein S14 | N | 101 | Acinetobacter Baumannii (Strain Ab0057) | MAKKGMINRELKREKTVAKYAAKRAELKATIANVNASDEERFEAMLKLQALPRNASPVRLRNRCGLTGRPHGYFRKFGLSRNKLRDTVMQGDVPGVVKASW |
| 30S ribosomal protein S15 | O | 89 | Acinetobacter Baumannii (Strain Ab0057) | MALTNADRAEIIAKFARAENDTGSPEVQVALLTAQINDLQGHFKAHKHDHHSRRGLIRMVNQRRKLLDYLNGKDHERYTALIGALGLRR |
| 50S ribosomal protein L34 | 1 | 44 | Acinetobacter Baumannii (Strain Ab0057) | MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLTV |
| 30S ribosomal protein S16 | P | 101 | Acinetobacter Baumannii (Strain Ab0057) | MLPMVGAGIIRKNYKAFIMVVIRLARGGAKKRPFYQIVVTDSRNARDGRFIERIGFFNPTAQGQAEKLRLDADRFAHWVSQGAQPSERVASLAAQAKKATA |
| 30S ribosomal protein S17 | Q | 85 | Acinetobacter Baumannii (Strain Ab0057) | MSEKTVRTLTGKVVSDKMDKSIVVLIERRVQHPLYGKSIRRSTKLHAHDENNVAKIGDVVTIKESRPISKTKAWTLVEVVEAAAE |
| 30S ribosomal protein S18 | R | 75 | Acinetobacter Baumannii (Strain Ab0057) | MARFYRRRKFCRFTAENVAYIDYKDIDTLKQYITENGKIVPSRITGTKARYQRQLALAIKQARYLSLIPYTDNHK |
| 30S ribosomal protein S19 | S | 91 | Acinetobacter Baumannii (Strain Ab0057) | MPRSLKKGPFVDAHLFAKVEAAVASNSRKPIKTWSRRSMILPDFVGLTISVHNGRNHVPVIVTEHMVGHKLGEFAPTRTYRGHGVDKKSKR |
| 30S ribosomal protein S20 | T | 88 | Acinetobacter Baumannii (Strain Ab0057) | MANSAQAKKRARQNVKARKHNASLRSMVRTYIKRTLSAIAGGDYAVATEAYKKAVPVIDRMADKGIIHKNKAARHKSRLNAQVKALAN |
| 30S ribosomal protein S21 | U | 71 | Acinetobacter Baumannii (Strain Ab0057) | MPQVKLKEGEPVDVAIRRFKRSCEKAGVLADVRKREFYEKPTQERKRKKAAAVKRYQKKLARESVRTTRLY |
| 50S ribosomal protein L27 | V | 85 | Acinetobacter Baumannii (Strain Ab0057) | MATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVETV |
| 50S ribosomal protein L28 | W | 78 | Acinetobacter Baumannii (Strain Ab0057) | MSKVCQVTGKRPVVGNNVSHANNKTKRRFEPNLHHHRFWLESEKRFVRLRLTTKGMRIIDKLGIEKVVADLRAQGQKI |
| 50S ribosomal protein L29 | X | 65 | Acinetobacter Baumannii (Strain Ab0057) | MKTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVQVARKTIARIKTLLTEKQGNGQ |
| 50S ribosomal protein L30 | Y | 58 | Acinetobacter Baumannii (Strain Ab0057) | MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE |
| 50S ribosomal protein L35 | 2 | 64 | Acinetobacter Baumannii (Strain Ab0057) | MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRMCPYI |
| 50S ribosomal protein L32 | Z | 61 | Acinetobacter Baumannii (Strain Ab0057) | MAVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHHVTKDGFYRGRQLFAKAADAE |
| 50S ribosomal protein L2 | C | 274 | Acinetobacter Baumannii (Strain Ab0057) | MPIQKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGRDGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARWRGVRPTVRGMAMNPIDHPHGGGEGRNKGIQPVSPWGQKAKGYKTRTNKRTTKMIIRDRRVK |
| 50S ribosomal protein L3 | D | 212 | Acinetobacter Baumannii (Strain Ab0057) | MAIGLVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTIKA |
| 50S ribosomal protein L4 | E | 200 | Acinetobacter Baumannii (Strain Ab0057) | MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSVAAAKKIEVELG |
| 50S ribosomal protein L36 | 3 | 38 | Acinetobacter Baumannii (Strain Ab0057) | MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23s ribosomal RNA | a | 2918 | NA | GUUGUAUAGUCAAGUAAUUAAGUGCAUGUGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAAGACGUGAUAGCCUGCGAAAAGCUCCGGGGAGGCGGCAAAUAUCCUUUGAUCCGGAGAUGUCUGAAUGGGGGAACCCACCUACUUUAAGGUAGGUAUUGCAACAUGAAUACAUAGUGUUGCAAGGCGAACGAGGGGAAGUGAAACAUCUCAGUACCCUUAGGAAAAGAAAUCAAUUGAGAUUCCCUCAGUAGCGGCGAGCGAACGGGGAUCAGCCCAUUAAGUUAUGUGUGUUUUAGUGGAACGCUCUGGGAAGUGCGAACGUAGAGGGUGAUAUUCCCGUACACGAAAGGGCACACAUAAUGAUGACGAGUAGGGCGAGGCACGUGAAACCUUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAUCCUGAAACCGCAUGCAUACAAGCAGUGGGAGCACCUUCGUGGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUAGCGAGGUUAACCGUAUAGGGGAGCCGUAGAGAAAUCGAGUCUUAAUAGGGCGUUUAGUUGCUGGGUAUAGACCCGAAACCAGGCGAUCUAUCCAUGAGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCCACUGUCGUUGAAAAGCCAGGGGAUGACUUGUGGAUAGGGGUGAAAGGCUAAUCAAGCCUGGUGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGGACGAAUACCAUAGGGGGUAGAGCACUGUUUCGGCUAGGGGGUCAUCCCGACUUACCAAACCGAUGCAAACUCCGAAUACCUAUGAGUACUAUCCGGGAGACAGACUGCGGGUGCUAACGUCCGUAGUCAAGAGGAAAACAAUCCAGACCGCCAGCUAAGGCCCCAAAAUCAUAGUUAAGUGGGAAACGAUGUGGGAAGGCAUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAAACUAUGUGCCGAAGCUGCGGAUGUAUACUUUGUAUACGUGGUAGGGGAGCGUUCUGUAAGCCGAUGAAGGUGUGUUGAGAAGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACGUGAGUAACGACAAAACGGGUGAAAAACCCGUUCGCCGAAAGACCAAGGGUUCCAGUCCAACGUUAAUCGGGGCUGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAAAUGGUUAAUAUUCCAUUACUUCUGUGUAAUGCGAUGAGAGGACGGAGAAGGCUAAAUCAGCCUGGCGUUGGUUGUCCAGGUGAAAGGAUGUAGGCAUGUAUCUUAGGCAAAUCCGGGGUACUCUAUGCUGAGAUCUGAUAGCAAGCUGUACUUGUGCAGCGAAGUGGUUGAUGCCAUGCUUCCAGGAAAAGUCUCUAAGCUUCAGUUACACAGGAAUCGUACCCGAAACCGACACAGGUGGUCAGGUCGAGUAGACCAAGGCGCUUGAGAGAACUCUGCUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCUGUUGUUGGUGAUGGAACUCGCUUCCUGAGCUGACGACAGCCGCAGAAACCAGGCCGCUGCAACUGUUUAUUAAAAACAUAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGAUGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUUAGCGUAAGCGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGGCCGUAACXAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCAUAAUGAUGGCGGCGCUGUCUCCAGCAGAGGCUCAGUGAAAUCGAAAUCGCUGUGAAGAUGCAGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUGCAGCUUGACACUGAACUUUGACCUUACUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAACGCUAGUUCCAGUGGAGCCGUCCUUGAAAUACCACCCUGGUAAUGUUGAGGUUCUAACUCUGUCCCGUGAUCCGGGACGAGGACCGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGUACGAAGGUGCGCUCAGCGUGGUCGGAAAUCACGCGUAGAGUAUAAAGGCAAAAGCGCGCUUAACUGCGAGACCCACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCUGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCUCAUCCUGGGGCUGAAGCAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGAGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUACCGUGGGCGCUGGAAAUUUGAGAGGAUCUGCUCCUAGUACGAGAGGACCAGAGUGGACGAACCUCUGGUGUACCGGUUGUGACGCCAGUCGCAUCGCCGGGUAGCUAUGUUCGGAAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCUACCUCAAGAUAAGAUUUCCCUAGGACUUUAUGUCCUCUAAAGAGCCGUUCGAGACUAGGACGUUGAUAGGUUGGAUGUGGAAGCAUAGUGAUAUGUGAAGCUGACCAAUACUAAUUGCUCGUGAGGCUUGACUAUACAACACCCAAGCAGUUG |
| 5s ribosomal RNA | b | 115 | NA | GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAACCUCUUAGCGCUGAUGGUAGUGUGGGAUUACCCAUGUGAGAGUAAGUCAUCGCCAGCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.