7M4V
A. baumannii ribosome-eravacycline complex: 50s
PDB DOI: 10.2210/pdb7m4v/pdb
Classification: RIBOSOME Organism(s): Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057
Deposited: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.54 Å
A. baumannii ribosome-eravacycline complex: 50s
Primary Citation of Related Structures: 7M4V
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 50S ribosomal protein L33 | 0 | 51 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MRDKIRLVSSAGTGYFYTTTKNKRTMPEKMEIKKFDPKIRQHVIFKEAKIK |
| 50S ribosomal protein L5 | F | 178 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MARLKARYNDELKAKLQEELSIKNVMEIPRITKITLNMGVGAAATDKKLLDGAVADMQLIAGQKPVVTLARKSIAGFKIRDGWPIGCKVTLRGDQMYEFLDRLISIAIPRIRDFRGFSAKSFDGRGNYSMGLKEQIVFPEIDFDKIDRIRGMDITITTTARTDDEGRALMRAFGFPFK |
| 50S ribosomal protein L6 | G | 177 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSRVAKAPVTVPNGVTVTQNGRQVEVKGSKGTLSFNLHALVELKQEEGKLQLAPAKESKDAWMQAGTARAVLNNLVKGVSEGFERKLQLVGVGYKAAVKGTVVNLNLGYSHPIDYALPEGVTAETPTATEIILKSANKQLLGQVAAEIRAYRSPEPYKGKGVRYSDEVILRKEAKKK |
| 50S ribosomal protein L9 | H | 148 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MDVILLQRIKNLGKLGDKVSVKAGYGRNFLIPQGKAVAATEANTAAFEARRAELEKQEAEVLAAAQARAEQLNEVNIVITAKAGDEGKLFGSIGTRDIADALTNAGLTVDRAEVRLPNGALRHTGEFNIAIQLHHDVVAEVLVTIVSE |
| 50S ribosomal protein L13 | I | 142 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKTLSAKPAEVQHDWFVVDATGKTLGRLATEIARRLRGKHKTSYTPHVDTGDYIIVINAEQVQVTGNKALDKKYYRHTEFPGGLKETNFEKLVAHKPEEIFERAVKGMLPKGPLGYAMIKKMKVYAGSEHPHAAQQPQVLDI |
| 50S ribosomal protein L14 | J | 122 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MIQTETMLDVADNSGARRVQCIKVLGGSHRRYASVGDIIKVTVKEAIPRARVKKGDVMNAVVVRTKFGIRRPDGSVIRFDDNAAVILNNNKAPIATRIFGPVTRELRTEQFMKIISLAPEVL |
| 50S ribosomal protein L15 | K | 146 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MTLRLNELAPAEGAKREHRRLGRGIGSGVGKTGGRGIKGQKSRKSGGVRPGFEGGQTAIYRRLPKFGFTSQIALKTAEVRLSELSKVEGDIVSLETLKAANVVRRDQIRARIVLSGEITRAFTVQGVALTKGAKAAIEAAGGKVEE |
| 50S ribosomal protein L16 | L | 137 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MLQPKRTKFRKVHKGRNTGLAHRGSTVSFGSIAIKATERGRMTARQIEAARRTISRRIKRGGKIFIRVFPDKPITEKPLEVRMGNGKGNVEYWVCEIKPGKILYEIEGVNEDLAREAFALAAAKLPFKTTIVTRTVM |
| 50S ribosomal protein L17 | M | 125 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MRHRNSGVKLGRTSSHRKAMFENLANSLFEHELIKTTLPKAKELRRVAEPLITLAKNDTVANRRLAFARTRNAATVGKLFTVLGPRYKERNGGYLRVLKAGFRAGDAAPMAYVELVDREVNTSAE |
| 50S ribosomal protein L18 | N | 116 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MNEKKQSRLRRAKSTRLHIRALGATRLCVNRTPRHIYAQVISADGGKVLAQASTLDASLRSGTTGNIEAATKVGALIAERAKAAGVTKVAFDRSGFKYHGRIKALADAAREGGLEF |
| 50S ribosomal protein L19 | O | 122 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSGKHPLVQAIENSQLKTDLPEFAPGDTVVVQVKVKEGDRERLQAFEGVVIAKKNRGLNSAFTVRKISSGVGVERVFQTHSPVVAKIEVKRRGDVRRAKLYYLRDLSGKAARIREKLPARKA |
| 50S ribosomal protein L34 | 1 | 44 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKRTFQPSELKRKRVHGFRARMATKAGRQVLARRRAKGRHSLTV |
| 50S ribosomal protein L20 | P | 119 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MARVKRGVVAHRRHKKILARAKGYYGARSRVYRVAFQAVIKAGQYAYRDRRQKKRQFRALWIARINAGARQNGLSYSRMIDGLKKAQVIIDRRVLADIAMHDAVAFAALAEKAKGALAA |
| 50S ribosomal protein L21 | Q | 103 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MYAVIQSGGKQHRVVEGETLKVELLKAESGATITFDDVLMVVNGDNIQIGAPVVAGAKVTAEVIGHGRHDKIRIIKMRRRKHYRKQQGHRQWFTELKITGISG |
| 50S ribosomal protein L22 | R | 109 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MEVTAKLRGAAISAQKARLVADLIRGKSVAHALNILNFSNKKAAVLVKKALESAIANAEHNNSLDVDDLKVSTIYVDEGMSLKRIMPRAKGRADRITKRTCHITVKVGV |
| 50S ribosomal protein L23 | S | 106 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MNNERIYQVLKGPVFSEKAQVLGDTAGVQVFKVDINATKLEIKKAVEKLFGVEVVKVNTTITKGKTKRFGRTLGRRSDVKKAYVTLKAGQDVEMADLGDTAESAAE |
| 50S ribosomal protein L24 | T | 105 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAKIKKGDQVIVIAGKEKGKQGTVLSVSEDRVKVEGLNLVKKHQKPNRVTGAEGGIVTQEASLHISNVAILNATTQKADRVGYQVIDGVKTRVYKSTGESVAVAK |
| 50S ribosomal protein L25 | U | 98 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MANFVLNAQARAEDKQGKGASRRLRRESLVPAIIYGGNAEPVAVTLELRELVKALESNVFFEEVVEIKVGDKVENVKIQALQRHPAKNTPMHADFKRA |
| 50S ribosomal protein L27 | V | 85 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MATKKAGGSTKNGRDSNPKMLGVKVYGGQTVTAGNIIVRQRGTEFHAGANVGMGRDHTLFATADGVVKFEVKGQFGRRYVKVETV |
| 50S ribosomal protein L28 | W | 78 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MSKVCQVTGKRPVVGNNVSHANNKTKRRFEPNLHHHRFWLESEKRFVRLRLTTKGMRIIDKLGIEKVVADLRAQGQKI |
| 50S ribosomal protein L29 | X | 65 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKTKDLREKSVEELKALLDEQQLNQFRLRMAKATGQLGKSHEVQVARKTIARIKTLLTEKQGNGQ |
| 50S ribosomal protein L30 | Y | 58 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKTIKVTQTKSSSHRLKNHKLCLQGLGLRRIGHTVEVQDTPSNRGMINKVYYMVSVEE |
| 50S ribosomal protein L35 | 2 | 64 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAKLKTRRGAAKRFKATANGFKRKQAFKRHILTKKSAKRIRQLRGCVMVHVSDVASVRRMCPYI |
| 50S ribosomal protein L32 | Z | 61 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAVQQNRKSRSRRDMRRSHDALTENALTVDQATGETHRRHHVTKDGFYRGRQLFAKAADAE |
| 50S ribosomal protein L36 | 3 | 38 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MKVQASVKKICGSCKVIRRNGVIRVICSAEPRHKQRQG |
| 50S ribosomal protein L2 | C | 274 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MPIQKCKPTSPGRRFVEKVVHDHLHKGAPYAPLVEAKKRTGGRNNNGHITTRHVGGGHKQHYRIVDFKRNKDGVPAVVERIEYDPNRTAHIALLKYADGERRYIIAPKGLRAGDKVQSGNDAPIRPGNCLPLRNMPIGSTLHNVELKIGKGAQLARSAGASVQLLGRDGSYAIIRLRSGEMRKVHVECRAVIGEVSNQENNLRSLGKAGAARWRGVRPTVRGMAMNPIDHPHGGGEGRNKGIQPVSPWGQKAKGYKTRTNKRTTKMIIRDRRVK |
| 50S ribosomal protein L3 | D | 212 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MAIGLVGRKCGMTRIFTDAGVSVPVTVIEVDPNRITQIKTLETDGYQAVQVTTGERRESRVTNAQKGHFAKAGVAAGRLVKEFRVTEAELEGREVGGTIGVDLFTVGQIVDVTGQSKGKGFQGGVKRWNFRTQDATHGNSVSHRVLGSTGQNQTPGRVFKGKKMAGHLGDERVTVQGLEIVSVDTERSVLVVKGAIPGATGGDVIVRPTIKA |
| 50S ribosomal protein L4 | E | 200 | Acinetobacter Baumannii (Strain Ab0057) , Acinetobacter Baumannii Ab0057 | MNLKTVSGSAVELSEVAFGREFNEALVHQVVTAYLAGGRQGTRAHKSRADVSGGGKKPFRQKGTGRARAGSIRSPIWVGGGKTFAARPQDWSQKVNRKMYRGAMQCILAELVRQDRLVLVEEFAVAAPKTKELLAKLNDLNAARALIVTDAVDENLYLAARNLPHVDVVDATAIDPVSLIAFDKVVMSVAAAKKIEVELG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 23s ribosomal RNA | a | 2918 | NA | GUUGUAUAGUCAAGUAAUUAAGUGCAUGUGGUGGAUGCCUUGGCAGUCAGAGGCGAUGAAAGACGUGAUAGCCUGCGAAAAGCUCCGGGGAGGCGGCAAAUAUCCUUUGAUCCGGAGAUGUCUGAAUGGGGGAACCCACCUACUUUAAGGUAGGUAUUGCAACAUGAAUACAUAGUGUUGCAAGGCGAACGAGGGGAAGUGAAACAUCUCAGUACCCUUAGGAAAAGAAAUCAAUUGAGAUUCCCUCAGUAGCGGCGAGCGAACGGGGAUCAGCCCAUUAAGUUAUGUGUGUUUUAGUGGAACGCUCUGGGAAGUGCGAACGUAGAGGGUGAUAUUCCCGUACACGAAAGGGCACACAUAAUGAUGACGAGUAGGGCGAGGCACGUGAAACCUUGUCUGAAUAUGGGGGGACCAUCCUCCAAGGCUAAAUACUCCUGACUGACCGAUAGUGAACCAGUACCGUGAGGGAAAGGCGAAAAGAACCCCUGUGAGGGGAGUGAAAUAGAUCCUGAAACCGCAUGCAUACAAGCAGUGGGAGCACCUUCGUGGUGUGACUGCGUACCUUUUGUAUAAUGGGUCAGCGACUUAUAUUCAGUAGCGAGGUUAACCGUAUAGGGGAGCCGUAGAGAAAUCGAGUCUUAAUAGGGCGUUUAGUUGCUGGGUAUAGACCCGAAACCAGGCGAUCUAUCCAUGAGCAGGUUGAAGGUUGGGUAACACUAACUGGAGGACCGAACCCACUGUCGUUGAAAAGCCAGGGGAUGACUUGUGGAUAGGGGUGAAAGGCUAAUCAAGCCUGGUGAUAGCUGGUUCUCCCCGAAAGCUAUUUAGGUAGCGCCUCGGACGAAUACCAUAGGGGGUAGAGCACUGUUUCGGCUAGGGGGUCAUCCCGACUUACCAAACCGAUGCAAACUCCGAAUACCUAUGAGUACUAUCCGGGAGACAGACUGCGGGUGCUAACGUCCGUAGUCAAGAGGAAAACAAUCCAGACCGCCAGCUAAGGCCCCAAAAUCAUAGUUAAGUGGGAAACGAUGUGGGAAGGCAUAGACAGCUAGGAGGUUGGCUUAGAAGCAGCCACCCUUUAAAGAAAGCGUAAUAGCUCACUAGUCGAGUCGGCCUGCGCGGAAGAUGUAACGGGGCUAAAACUAUGUGCCGAAGCUGCGGAUGUAUACUUUGUAUACGUGGUAGGGGAGCGUUCUGUAAGCCGAUGAAGGUGUGUUGAGAAGCAUGCUGGAGGUAUCAGAAGUGCGAAUGCUGACGUGAGUAACGACAAAACGGGUGAAAAACCCGUUCGCCGAAAGACCAAGGGUUCCAGUCCAACGUUAAUCGGGGCUGGGUGAGUCGACCCCUAAGGCGAGGCCGAAAGGCGUAGUCGAUGGGAAAAUGGUUAAUAUUCCAUUACUUCUGUGUAAUGCGAUGAGAGGACGGAGAAGGCUAAAUCAGCCUGGCGUUGGUUGUCCAGGUGAAAGGAUGUAGGCAUGUAUCUUAGGCAAAUCCGGGGUACUCUAUGCUGAGAUCUGAUAGCAAGCUGUACUUGUGCAGCGAAGUGGUUGAUGCCAUGCUUCCAGGAAAAGUCUCUAAGCUUCAGUUACACAGGAAUCGUACCCGAAACCGACACAGGUGGUCAGGUCGAGUAGACCAAGGCGCUUGAGAGAACUCUGCUGAAGGAACUAGGCAAAAUGGUACCGUAACUUCGGGAGAAGGUACGCUGUUGUUGGUGAUGGAACUCGCUUCCUGAGCUGACGACAGCCGCAGAAACCAGGCCGCUGCAACUGUUUAUUAAAAACAUAGCACUCUGCAAACACGAAAGUGGACGUAUAGGGUGUGAUGCCUGCCCGGUGCUGGAAGGUUAAUUGAUGGGGUUAGCGUAAGCGAAGCUCUUGAUCGAAGCCCCAGUAAACGGCGGCCGUAACXAUAACGGUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGCAUAAUGAUGGCGGCGCUGUCUCCAGCAGAGGCUCAGUGAAAUCGAAAUCGCUGUGAAGAUGCAGUGUACCCGCGGCUAGACGGAAAGACCCCGUGAACCUUUACUGCAGCUUGACACUGAACUUUGACCUUACUUGUGUAGGAUAGGUGGGAGGCUUUGAAGCUGGAACGCUAGUUCCAGUGGAGCCGUCCUUGAAAUACCACCCUGGUAAUGUUGAGGUUCUAACUCUGUCCCGUGAUCCGGGACGAGGACCGUGUCUGGUGGGUAGUUUGACUGGGGCGGUCUCCUCCUAAAGAGUAACGGAGGAGUACGAAGGUGCGCUCAGCGUGGUCGGAAAUCACGCGUAGAGUAUAAAGGCAAAAGCGCGCUUAACUGCGAGACCCACAAGUCGAGCAGGUACGAAAGUAGGUCUUAGUGAUCCGGUGGUUCUGUAUGGAAGGGCCAUCGCUCAACGGAUAAAAGGUACUCUGGGGAUAACAGGCUGAUACCGCCCAAGAGUUCAUAUCGACGGCGGUGUUUGGCACCUCGAUGUCGGCUCAUCUCAUCCUGGGGCUGAAGCAGGUCCCAAGGGUAUGGCUGUUCGCCAUUUAAAGAGGUACGCGAGCUGGGUUUAGAACGUCGUGAGACAGUUCGGUCCCUAUCUACCGUGGGCGCUGGAAAUUUGAGAGGAUCUGCUCCUAGUACGAGAGGACCAGAGUGGACGAACCUCUGGUGUACCGGUUGUGACGCCAGUCGCAUCGCCGGGUAGCUAUGUUCGGAAGGGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCCUACCUCAAGAUAAGAUUUCCCUAGGACUUUAUGUCCUCUAAAGAGCCGUUCGAGACUAGGACGUUGAUAGGUUGGAUGUGGAAGCAUAGUGAUAUGUGAAGCUGACCAAUACUAAUUGCUCGUGAGGCUUGACUAUACAACACCCAAGCAGUUG |
| 5s ribosomal RNA | b | 115 | NA | GCUGGCGACCAUAGCAAGAGUGAACCACCUGAUCCCUUCCCGAACUCAGAAGUGAAACCUCUUAGCGCUGAUGGUAGUGUGGGAUUACCCAUGUGAGAGUAAGUCAUCGCCAGCU |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-03-22 Deposition Author(s): Morgan, C.E. , Yu, E.W.