Cryo-em structure of the hcmv pentamer bound by antibodies 1-103, 1-32 and 2-25
PDB DOI: 10.2210/pdb7m30/pdb
Classification: VIRAL PROTEIN/IMMUNE SYSTEM Organism(s): Homo Sapiens , Human Cytomegalovirus
Deposited: 2021-03-17 Deposition Author(s): Mclellan, J.S. , Wrapp, D.
Method: ELECTRON MICROSCOPY Resolution: 3.81 Å
Cryo-em structure of the hcmv pentamer bound by antibodies 1-103, 1-32 and 2-25
Primary Citation of Related Structures: 7M30
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
Envelope glycoprotein L | B | 248 | Homo Sapiens , Human Cytomegalovirus | VAVSVAPTAAEKVPAECPELTRRCLLGEVFQGDKYESWLRPLVNVTRRDGPLSQLIRYRPVTPEAANSVLLDDAFLDTLALLYNNPDQLRALLTLLSSDTAPRWMTVMRGYSECGDGSPAVYTCVDDLCRGYDLTRLSYGRSIFTEHVLGFELVPPSLFNVVVAIRNEATRTNRAVRLPVSTAAAPEGITLFYGLYNAVKEFCLRHQLDPPLLRHLDKYYAGLPPELKQTRVNLPAHSRYGPQAVDAR |
1-103 Fab Light Chain | N | 210 | Homo Sapiens , Human Cytomegalovirus | DIQLTQSPSFLSASVGDRVTITCRASQDISSYVAWYQQKPGNAPKLLISSASTLPSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQLNNFGPGTTVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Envelope protein UL128 | C | 144 | Homo Sapiens , Human Cytomegalovirus | EECCEFINVNHPPERCYDFKMCNRFTVALRCPDGEVCYSPEKTAEIRGIVTTMTHSLTRQVVHNKLTSCNYNPLYLEADGRIRCGKVNDKAQYLLGAAGSVPYRWINLEYDKITRIVGLDQYLESVKKHKRLDVCRAKMGYMLQ |
Envelope glycoprotein UL130 | D | 189 | Homo Sapiens , Human Cytomegalovirus | SPWSTLTANQNPSPPWSKLTYSKPHDAATFYCPFLYPSPPRSPLQFSGFQQVSTGPECRNETLYLLYNREGQTLVERSSTWVKKVIWYLSGRNQTILQRMPQTASKPSDGNVQISVEDAKIFGAHMVPKQTKLLRFVVNDGTRYQMCVMKLESWAHVFRDYSVSFQVRLTFTEANNQTYTFCTHPNLIV |
UL131A | E | 111 | Homo Sapiens , Human Cytomegalovirus | QCQRETAEKNDYYRVPHYWDACSRALPDQTRYKYVEQLVDLTLNYHYDASHGLDNFDVLKRINVTEVSLLISDFRRQNRRGGTNKRTTFNAAGSLAPHARSLEFSVRLFAN |
2-25 Fab Heavy Chain | F | 234 | Homo Sapiens , Human Cytomegalovirus | QVQLVESGAEVKKPGASVKVSCKASGYTFTNYAIHWVRQAPGQRLEWMGWINAGRGNTKYSQKFQGRVTITRDTSASTAYMELSSLRSEDAAVYFCARDESTGDYYYYMDVWGKGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ |
2-25 Fab Light Chain | G | 212 | Homo Sapiens , Human Cytomegalovirus | SYELTQPPSVSVSPGQTASITCSGDRLDDKYASWYQQKAGQSPVLVIYQDNKRPSGIPERFSGSNSGNTATLTISGTQAMDEADYYCQAWDSDTYVFGTGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPTECS |
1-32 Fab Heavy Chain | H | 241 | Homo Sapiens , Human Cytomegalovirus | QVKLVESGGGVVQPGRSLRLSCAGSGFAFDNYAMHWVRQAPGKGLEWVAVISLEGRNKYYAGPAKGRFSISRDNSRNTVHLQMNSLRPEDTAVYFCARDMRYYYDSNGHYRNRYGMDVWGQGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ |
1-32 Fab Light Chain | L | 213 | Homo Sapiens , Human Cytomegalovirus | DIQMTQSPSSLSASVGDSVTITCQASQDINQFVSWYQQKPGKPPKLLIYDASNLESGVPSRFSGSGSGTHFTFTISSLQPDDIATYYCQQYENLFTFGPGTKVDIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
1-103 Fab Heavy Chain | M | 232 | Homo Sapiens , Human Cytomegalovirus | QLQLQESGPGLVKPSETLSLTCSVSGDAISGSNYYWGWIRQPPGKGLQWIGSIYHTGSTFYNPSFSSRVTLSVDTSKNQFSLKLISVNAADTAVYYCARRIRGYSGTYDWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKGLEVLFQ |
Method: ELECTRON MICROSCOPY
Deposited Date: 2021-03-17 Deposition Author(s): Mclellan, J.S. , Wrapp, D.