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7M08

Post-catalytic nicked complex of dna polymerase lambda with bound 1-nt gapped ssb substrate and incoming dumpnpp

PDB DOI: 10.2210/pdb7m08/pdb

Classification: TRANSFERASE
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2021-03-10
Deposition Author(s): Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.7 Å

7m08
Literature

Post-catalytic nicked complex of dna polymerase lambda with bound 1-nt gapped ssb substrate and incoming dumpnpp

Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.

Primary Citation of Related Structures: 7M08


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA polymerase lambda A 346 Homo Sapiens , Synthetic Construct GSAAAVLDKWVCAQPSSQKATNHNLHITEKLEVLAKAYSVQGDKWRALGYAKAINALKSFHKPVTSYQEACSIPGIGKRMAEKIIEILESGHLRKLDHISESVPVLELFSNIWGAGTKTAQMWYQQGFRSLEDIRSQASLTTQQAIGLKHYSDFLERMPREEATEIEQTVQKAAQAFNSGLLCVACGSYRRGKATCGDVDVLITHPDGRSHRGIFSRLLDSLRQEGFLTDDLVSQEENGQQQKYLGVCRLPGPGRRHRRLDIIVVPYSEFACALLYFTGSAHFNRSMRALAKTKGMSLSEHALSTAVVRNTHGCKVGPGRVLPTPTEKDVFRLLGLPYREPAERDW

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*GP*GP*CP*AP*GP*TP*AP*CP*TP*G)-3') t 11 NA CGGCAGTACTG
DNA (5'-D(*CP*AP*GP*TP*AP*CP*T)-3') p 7 NA CAGTACT
DNA (5'-D(P*GP*CP*CP*G)-3') d 4 NA GCCG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2021-03-10
Deposition Author(s): Bebenek, K. , Kaminski, A.M. , Kunkel, T.A. , Pedersen, L.C.